Evidence map›Paper›PMID 27166813›Full record

ArticleBiophysical journal2016

A Mechanism for Cytoplasmic Streaming: Kinesin-Driven Alignment of Microtubules and Fast Fluid Flows.

Corey E Monteith, Matthew E Brunner, Inna Djagaeva, Anthony M Bielecki, Joshua M Deutsch, William M Saxton

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Cytoplasmic stirring by active carpets.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Going with the flow: insights fromPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Instability-driven oscillations of elastic microfilaments.Journal of the Royal Society, Interface · 2018
    Article
  14. Article
  15. Oscillatory fluid flow drives scaling of contraction wave with system size.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Article
  17. Spatial confinement of active microtubule networks induces large-scale rotational cytoplasmic flow.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  18. The rich somatic life of Wolbachia.MicrobiologyOpen · 2016
    Review
  19. Microtubule-microtubule sliding by kinesin-1 is essential for normal cytoplasmic streaming in Drosophila oocytes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Corey E MonteithDepartment of Molecular Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California.
Matthew E BrunnerDepartment of Physics, University of California Santa Cruz, Santa Cruz, California.
Inna DjagaevaDepartment of Molecular Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California.
Anthony M BieleckiDepartment of Molecular Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California.
Joshua M DeutschDepartment of Physics, University of California Santa Cruz, Santa Cruz, California. Electronic address: josh@ucsc.edu.
William M SaxtonDepartment of Molecular Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California. Electronic address: bsaxton@ucsc.edu.
University of California, Santa Cruz · US

Funding

MECHANISMS AND FUNCTIONS OF SUBCELLULAR MOTILITYR01GM046295 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SAXTON, WILLIAM M · 1991 to 2016
$3.7M
NIGMS NIH HHS R01 GM046295
6 · The paper itself

Abstract

The transport of cytoplasmic components can be profoundly affected by hydrodynamics. Cytoplasmic streaming in Drosophila oocytes offers a striking example. Forces on fluid from kinesin-1 are initially directed by a disordered meshwork of microtubules, generating minor slow cytoplasmic flows. Subsequently, to mix incoming nurse cell cytoplasm with ooplasm, a subcortical layer of microtubules forms parallel arrays that support long-range, fast flows. To analyze the streaming mechanism, we combined observations of microtubule and organelle motions with detailed mathematical modeling. In the fast state, microtubules tethered to the cortex form a thin subcortical layer and undergo correlated sinusoidal bending. Organelles moving in flows along the arrays show velocities that are slow near the cortex and fast on the inward side of the subcortical microtubule layer. Starting with fundamental physical principles suggested by qualitative hypotheses, and with published values for microtubule stiffness, kinesin velocity, and cytoplasmic viscosity, we developed a quantitative coupled hydrodynamic model for streaming. The fully detailed mathematical model and its simulations identify key variables that can shift the system between disordered (slow) and ordered (fast) states. Measurements of array curvature, wave period, and the effects of diminished kinesin velocity on flow rates, as well as prior observations on f-actin perturbation, support the model. This establishes a concrete mechanistic framework for the ooplasmic streaming process. The self-organizing fast phase is a result of viscous drag on kinesin-driven cargoes that mediates equal and opposite forces on cytoplasmic fluid and on microtubules whose minus ends are tethered to the cortex. Fluid moves toward plus ends and microtubules are forced backward toward their minus ends, resulting in buckling. Under certain conditions, the buckling microtubules self-organize into parallel bending arrays, guiding varying directions for fast plus-end directed fluid flows that facilitate mixing in a low Reynolds number regime.

Indexed as

Cytoplasmic StreamingHydrodynamicsMechanical PhenomenaModels, BiologicalBiomechanical PhenomenaKinesinsMicrotubulesMovementOocytesKinesins

Identifiers

PMID27166813
PMCPMC4939475
OpenAlexW2388541855

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.