Evidence map›Paper›PMID 27165017›Full record

ArticleAsian-Australasian journal of animal sciences2016

Regional Differences of Proteins Expressing in Adipose Depots Isolated from Cows, Steers and Bulls as Identified by a Proteomic Approach.

Jin Hyoung Cho, Jin Young Jeong, Ra Ham Lee, Mi Na Park, Seok-Ho Kim, Seon-Min Park, Jae-Cheon Shin, Young-Joo Jeon, Jung-Hyun Shim, Nag-Jin Choi and 8 more

Open access · goldAbstract read
In one paragraph

Article in Asian-Australasian journal of animal sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 1 country.

Jin Hyoung ChoDepartment of Dental Pharmacology, School of Dentistry and Institute of Dental Bioscience, BK21 plus, Chonbuk National University, Jeonju 651-756, Korea.
Jin Young JeongAnimal Products Utilization Division, National Institute of Animal science, Jeonju 565-851, Korea.
Ra Ham LeeDepartment of Dental Pharmacology, School of Dentistry and Institute of Dental Bioscience, BK21 plus, Chonbuk National University, Jeonju 651-756, Korea.
Mi Na ParkAnimal Products Utilization Division, National Institute of Animal science, Jeonju 565-851, Korea.
Seok-Ho KimAging Research Institute, Korea Research Institute of Bioscience & BioTechnology, Daejeon 34141, Korea.
Seon-Min ParkPohang Center for Evaluation of Biomaterials, Pohang Technopark, Pohang 37668, Korea.
Jae-Cheon ShinDepartment of Pharmacy, College of Pharmacy and Natural Medicine Research Institute, Mokpo National University, Mokpo 534-729, Korea.
Young-Joo JeonDepartment of Dental Pharmacology, School of Dentistry and Institute of Dental Bioscience, BK21 plus, Chonbuk National University, Jeonju 651-756, Korea.
Jung-Hyun ShimDepartment of Pharmacy, College of Pharmacy and Natural Medicine Research Institute, Mokpo National University, Mokpo 534-729, Korea.
Nag-Jin ChoiDepartment of Animal Science, College of Agricultural and Life Science, Chonbuk National University, Jeonju 54896, Korea.
Kang Seok SeoDepartment of Animal Science and Technology, Sunchon National University, Suncheon 57922, Korea.
Young Sik ChoDepartment of Pharmacy, Keimyung University, Daegu 704-701, Korea.
MinSeok S KimDepartment of Biomedical Engineering, Konyang University, Daejeon 35365, Korea.
Sungho KoDepartment of Applied Bioscience, CHA University, Seongnam 463-836, Korea.
Jae-Min SeoDepartment of Prosthodontics, School of Dentistry and Institute of Oral Bio-Science and Research Institute of Clinical Medicine, Chonbuk National University, Jeonju 561-756, Korea.
Seung-Youp LeeCluster for Craniofacial Development and Regeneration Research, Institute of Oral Biosciences and School of Dentistry, Chonbuk National University, Jeonju 561-756, Korea.
Jung-Il ChaeDepartment of Dental Pharmacology, School of Dentistry and Institute of Dental Bioscience, BK21 plus, Chonbuk National University, Jeonju 651-756, Korea.
Hyun-Jeong LeeAnimal Nutritional Physiology Team, National Institute of Animal Science, Jeonju 565-851, Korea.
Jeonbuk National University · KRNational Institute of Animal Science · KRMokpo National University · KRCHA University · KRKeimyung University · KRKonyang University · KRKorea Research Institute of Bioscience and Biotechnology · KRPohang TechnoPark (South Korea) · KRSunchon National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adipose tissue in the loin muscle area of beef cattle as a marbling factor is directly associated with beef quality. To elucidate whether properties of proteins involved in depot specific adipose tissue were sex-dependent, we analyzed protein expression of intramuscular adipose tissue (IMAT) and omental adipose tissue (OMAT) from Hanwoo cows, steers, and bulls of Korean native beef cattle by liquid chromatography-tandem mass spectrometry (LC-MS/MS)-based proteomic analysis, quantitative polymerase chain reaction (PCR) and western blot analysis. Two different adipose depots (i.e. intramuscular and omental) were collected from cows (n = 7), steers (n = 7), or bulls (n = 7). LC-MS/MS revealed a total of 55 and 35 proteins in IMAT and OMAT, respectively. Of the 55 proteins identified, 44, 40, and 42 proteins were confirmed to be differentially expressed in IMAT of cows, steers, and bulls, respectively. In OMAT of cows, steers, and bulls, 33, 33, and 22 were confirmed to be differentially expressed, respectively. Tropomyosin (TPM) 1, TPM 2, and TPM3 were subjected to verification by quantitative PCR and western blot analysis in IMAT and OMAT of Hanwoo cows, steers, and bulls as key factors closely associated with muscle development. Both mRNA levels and protein levels of TPM1, TPM2, and TPM3 in IMAT were lower in bulls compared to in cows or steers suggesting that they were positively correlated with marbling score and quality grade. Our results may aid the regulation of marbling development and improvement of meat quality grades in beef cattle.

Indexed as

Adipose DepotsHanwooLiquid Chromatography-tandem Mass SpectrometryMarblingMeat Quality

Identifiers

PMID27165017
PMCPMC4932575
OpenAlexW2339327053

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.