ArticleBreeding science2016
Development of cleaved amplified polymorphic sequence markers and a CAPS-based genetic linkage map in watermelon (Citrullus lanatus [Thunb.] Matsum. and Nakai) constructed using whole-genome re-sequencing data.
Article in Breeding science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Watermelon fruit metabolome gene discovery and its application in breeding: a review.Frontiers in plant science · 2025Review
- Quantitative Trait Loci Mapping and Comparative Transcriptome Analysis of Fruit Weight (FW) in Watermelon (Genes · 2024Article
- Phytochemical Profile, Antioxidant Activity, Anti-Hyperglycemic Effect and Toxicity Assessment ofLife (Basel, Switzerland) · 2022Article
- Biparental genetic mapping reveals that CmCLAVATA3 (CmCLV3) is responsible for the variation in carpel number in melon (Cucumis melo L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Mapping of genetic loci controlling fruit linked morphological traits of melon using developed CAPS markers.Molecular biology reports · 2022Article
- Development of Whole Genome SNP-CAPS Markers and Preliminary QTL Mapping of Fruit Pedicel Traits in Watermelon.Frontiers in plant science · 2022Article
- Primary mapping of quantitative trait loci regulating multivariate horticultural phenotypes of watermelon (Frontiers in plant science · 2022Article
- Fine mapping and identification of the candidate gene BFS for fruit shape in wax gourd (Benincasa hispida).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Review
- Linking the Phytochemicals and the α-Glucosidase and α-Amylase Enzyme Inhibitory Effects ofFoods (Basel, Switzerland) · 2021Article
- Genetic and Pre- and Postharvest Factors Influencing the Content of Antioxidants in Cucurbit Crops.Antioxidants (Basel, Switzerland) · 2021Review
- Callus Culture of Thai Basil Is an Effective Biological System for the Production of Antioxidants.Molecules (Basel, Switzerland) · 2020Article
- Genetic architecture of fruit size and shape variation in cucurbits: a comparative perspective.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Discovery of the Genomic Region and Candidate Genes of theFrontiers in plant science · 2020Article
- Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits.Nature genetics · 2019Article
- QTL mapping and genome-wide association study reveal two novel loci associated with green flesh color in cucumber.BMC plant biology · 2019Article
- Whole genome resequencing of watermelons to identify single nucleotide polymorphisms related to flesh color and lycopene content.PloS one · 2019Article
- Construction of A High-Density Genetic Map and Mapping of Fruit Traits in Watermelon (International journal of molecular sciences · 2018Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cleaved amplified polymorphic sequence (CAPS) markers are useful tools for detecting single nucleotide polymorphisms (SNPs). This study detected and converted SNP sites into CAPS markers based on high-throughput re-sequencing data in watermelon, for linkage map construction and quantitative trait locus (QTL) analysis. Two inbred lines, Cream of Saskatchewan (COS) and LSW-177 had been re-sequenced and analyzed by Perl self-compiled script for CAPS marker development. 88.7% and 78.5% of the assembled sequences of the two parental materials could map to the reference watermelon genome, respectively. Comparative assembled genome data analysis provided 225,693 and 19,268 SNPs and indels between the two materials. 532 pairs of CAPS markers were designed with 16 restriction enzymes, among which 271 pairs of primers gave distinct bands of the expected length and polymorphic bands, via PCR and enzyme digestion, with a polymorphic rate of 50.94%. Using the new CAPS markers, an initial CAPS-based genetic linkage map was constructed with the F2 population, spanning 1836.51 cM with 11 linkage groups and 301 markers. 12 QTLs were detected related to fruit flesh color, length, width, shape index, and brix content. These newly CAPS markers will be a valuable resource for breeding programs and genetic studies of watermelon.
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