ArticleBreeding science2016
Characterization of a mini core collection of Japanese wheat varieties using single-nucleotide polymorphisms generated by genotyping-by-sequencing.
Article in Breeding science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Dynamics of resistant genes and their relationship to resistance to wheat yellow mosaic disease in Japanese wheat germplasms.Breeding science · 2026Article
- Current status and future perspective of genomics-assisted breeding in wheat (Breeding science · 2026Article
- TaAGL6-B1 identified as a candidate gene for the dominant awn-inhibitor locus B2 in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genomic diversity of the Japanese wheat core collection and selection of alleles for agronomic traits in the breeding process.Breeding science · 2024Article
- Genetic Diversity and Genome-Wide Association Study for the Phenology Response of Winter Wheats of North America, Western Asia, and Europe.Plants (Basel, Switzerland) · 2023Article
- Natural variations of wheat EARLY FLOWERING 3 highlight their contributions to local adaptation through fine-tuning of heading time.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Allelic variations ofBreeding science · 2022Article
- Developing core marker sets for effective genomic-assisted selection in wheat and barley breeding programs.Breeding science · 2022Article
- Harnessing the diversity of wild emmer wheat for genetic improvement of durum wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- MIG-seq is an effective method for high-throughput genotyping in wheat (Triticum spp.).DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- Population Structure and Genetic Diversity of Two-Rowed Barley Accessions from Kazakhstan Based on SNP Genotyping Data.Plants (Basel, Switzerland) · 2021Article
- De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes.Plant & cell physiology · 2021Article
- Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume color.Communications biology · 2021Article
- Genetic Diversity of a Natural Population ofFrontiers in genetics · 2021Article
- Genome-Wide Association Study and Post-genome-Wide Association Study Analysis for Spike Fertility and Yield Related Traits in Bread Wheat.Frontiers in plant science · 2021Article
- Appraisal of wheat genomics for gene discovery and breeding applications: a special emphasis on advances in Asia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Constructing a Core Collection of the Medicinal PlantFrontiers in plant science · 2020Article
- Multifamily QTL analysis and comprehensive design of genotypes for high-quality soft wheat.PloS one · 2020Article
- Development of Genome-Wide SNP Markers for Barley via Reference- Based RNA-Seq Analysis.Frontiers in plant science · 2019Article
- Grain dormancy genes responsible for preventing pre-harvest sprouting in barley and wheat.Breeding science · 2018Review
Corrections and comments
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6 authors.
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Abstract
A core collection of Japanese wheat varieties (JWC) consisting of 96 accessions was established based on their passport data and breeding pedigrees. To clarify the molecular basis of the JWC collection, genome-wide single-nucleotide polymorphism (SNP) genotyping was performed using the genotyping-by-sequencing (GBS) approach. Phylogenetic tree and population structure analyses using these SNP data revealed the genetic diversity and relationships among the JWC accessions, classifying them into four groups; "varieties in the Hokkaido area", "modern varieties in the northeast part of Japan", "modern varieties in the southwest part of Japan" and "classical varieties including landraces". This clustering closely reflected the history of wheat breeding in Japan. Furthermore, to demonstrate the utility of the JWC collection, we performed a genome-wide association study (GWAS) for three traits, namely, "days to heading in autumn sowing", "days to heading in spring sowing" and "culm length". We found significantly associated SNP markers with each trait, and some of these were closely linked to known major genes for heading date or culm length on the genetic map. Our study indicates that this JWC collection is a useful set of germplasm for basic and applied research aimed at understanding and utilizing the genetic diversity among Japanese wheat varieties.
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