Evidence map›Paper›PMID 27162351›Full record

Trial reportProceedings of the National Academy of Sciences of the United States of America2016

Epigenomic profiling reveals an association between persistence of DNA methylation and metabolic memory in the DCCT/EDIC type 1 diabetes cohort.

Zhuo Chen, Feng Miao, Andrew D Paterson, John M Lachin, Lingxiao Zhang, Dustin E Schones, Xiwei Wu, Jinhui Wang, Joshua D Tompkins, Saul Genuth and 4 more

Open access · bronzeAbstract readClinical TrialComparative Study
In one paragraph

Trial report in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed, 2 pooled it
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 2 syntheses or guidelines pooled it, 239 citations in OpenAlex.

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100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Zhuo ChenDepartment of Diabetes Complications and Metabolism, Beckman Research Institute of City of Hope, Duarte, CA 91010;
Feng MiaoDepartment of Diabetes Complications and Metabolism, Beckman Research Institute of City of Hope, Duarte, CA 91010;
Andrew D PatersonGenetics and Genome Biology, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada;
John M LachinThe Biostatistics Center, The George Washington University, Rockville, MD 20852-3943;
Lingxiao ZhangDepartment of Diabetes Complications and Metabolism, Beckman Research Institute of City of Hope, Duarte, CA 91010;
Dustin E SchonesDepartment of Diabetes Complications and Metabolism, Beckman Research Institute of City of Hope, Duarte, CA 91010;
Xiwei WuDepartment of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, CA 91010;
Jinhui WangDepartment of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, CA 91010;
Joshua D TompkinsDepartment of Diabetes Complications and Metabolism, Beckman Research Institute of City of Hope, Duarte, CA 91010;
Saul GenuthCase Western Reserve University, Cleveland, OH 44106.
Barbara H BraffettThe Biostatistics Center, The George Washington University, Rockville, MD 20852-3943;
Arthur D RiggsDepartment of Diabetes Complications and Metabolism, Beckman Research Institute of City of Hope, Duarte, CA 91010; ariggs@coh.org rnatarajan@coh.org.
DCCT/EDIC Research Group
Rama NatarajanDepartment of Diabetes Complications and Metabolism, Beckman Research Institute of City of Hope, Duarte, CA 91010; ariggs@coh.org rnatarajan@coh.org.
City of Hope · USCase Western Reserve University · USGeorge Washington University · USHospital for Sick Children · CA

Funding

Limited Competition for the Continuation of Epidemiology of Diabetes Interventions and Complications (EDIC) Study Clinical Research Center (Collaborative U01)U01DK094157 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI Ionut Bebu, Barbara Halina Braffett · 2011 to 2026
$97.6M
Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Epidemiology of Diabetes Interventions and Complications Data Coordinating CenterU01DK094176 · NIDDK · GEORGE WASHINGTON UNIVERSITY · PI BEBU, IONUT, BRAFFETT, BARBARA HALINA · 2012 to 2022
$30.8M
Inflammatory Gene Transcription In Diabetic ConditionsR01DK065073 · NIDDK · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI NATARAJAN, RAMA · 2003 to 2021
$7.9M
Transcriptional Regulation by Angiotensin II in Vascular Smooth Muscle CellsR01HL106089 · NHLBI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NATARAJAN, RAMA · 2011 to 2024
$6.6M
Transforming growth factor beta1, microRNAs, lncRNA and diabetic nephropathyR01DK081705 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NATARAJAN, RAMA · 2009 to 2023
$6.1M
ROLE OF 12-LIPOXYGENASE IN DIABETIC NEPHROPATHYR01DK058191 · NIDDK · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI NATARAJAN, RAMA · 2001 to 2016
$5.3M
Epigenetic Markers of Complications and Metabolic Memory in the DCCT/EDIC cohort.DP3DK106917 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NATARAJAN, RAMA · 2015 to 2015
$2.2M
NCI NIH HHS P30 CA033572NHLBI NIH HHS R01 HL106089NIDDK NIH HHS DP3 DK106917NIDDK NIH HHS R01 DK058191NIDDK NIH HHS R01 DK065073NIDDK NIH HHS R01 DK081705NIDDK NIH HHS U01 DK094157NIDDK NIH HHS U01 DK094176
6 · The paper itself

Abstract

We examined whether persistence of epigenetic DNA methylation (DNA-me) alterations at specific loci over two different time points in people with diabetes are associated with metabolic memory, the prolonged beneficial effects of intensive vs. conventional therapy during the Diabetes Control and Complications Trial (DCCT) on the progression of microvascular outcomes in the long-term follow-up Epidemiology of Diabetes Interventions and Complications (EDIC) Study. We compared DNA-me profiles in genomic DNA of whole blood (WB) isolated at EDIC Study baseline from 32 cases (DCCT conventional therapy group subjects showing retinopathy or albuminuria progression by EDIC Study year 10) vs. 31 controls (DCCT intensive therapy group subjects without complication progression by EDIC year 10). DNA-me was also profiled in blood monocytes (Monos) of the same patients obtained during EDIC Study years 16-17. In WB, 153 loci depicted hypomethylation, and 225 depicted hypermethylation, whereas in Monos, 155 hypomethylated loci and 247 hypermethylated loci were found (fold change ≥1.3; P < 0.005; cases vs. controls). Twelve annotated differentially methylated loci were common in both WB and Monos, including thioredoxin-interacting protein (TXNIP), known to be associated with hyperglycemia and related complications. A set of differentially methylated loci depicted similar trends of associations with prior HbA1c in both WB and Monos. In vitro, high glucose induced similar persistent hypomethylation at TXNIP in cultured THP1 Monos. These results show that DNA-me differences during the DCCT persist at certain loci associated with glycemia for several years during the EDIC Study and support an epigenetic explanation for metabolic memory.

Indexed as

DNA MethylationEpigenomicsGenetic LociAdolescentAdultCarrier ProteinsCell Line, TumorCohort StudiesDiabetes Mellitus, Type 1FemaleGlycated HemoglobinHumansMaleCarrier ProteinsGlycated Hemoglobinhemoglobin A1c protein, humanTXNIP protein, humandiabetic complicationsDNA methylationepigeneticsmetabolic memoryTXNIP

Identifiers

PMID27162351
PMCPMC4890596
OpenAlexW2367975225

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.