Evidence map›Paper›PMID 27162172›Full record

ArticleeLife2016

Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi.

Edgar M Medina, Jonathan J Turner, Raluca Gordân, Jan M Skotheim, Nicolas E Buchler

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 65 citations in OpenAlex.

  1. The Origin and Early Evolution of Fungi: Challenges, Inferences, and Principles.Annual review of cell and developmental biology · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Quiescence inAnnual review of genetics · 2022
    Review
  11. Diploid-dominant life cycles characterize the early evolution of Fungi.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Budding yeast relies on GScience advances · 2021
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Edgar M MedinaDepartment of Biology, Duke University, Durham, United States.ORCID 0000-0002-5518-5933
Jonathan J TurnerDepartment of Biology, Stanford University, Stanford, United States.ORCID 0000-0001-7311-0313
Raluca GordânCenter for Genomic and Computational Biology, Duke University, Durham, United States.ORCID 0000-0002-6404-6556
Jan M SkotheimDepartment of Biology, Stanford University, Stanford, United States.ORCID 0000-0001-8420-6820
Nicolas E BuchlerDepartment of Biology, Duke University, Durham, United States.ORCID 0000-0003-3940-3432
Duke University · USStanford University · US

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI FERRELL, JAMES E. · 2013 to 2017
$10.9M
Mechanisms of restriction point response to dynamic growth factor signalsR01GM092925 · NIGMS · STANFORD UNIVERSITY · PI SKOTHEIM, JAN M · 2010 to 2018
$2.8M
Rewiring the yeast brain: Redundancy and interference in genetic networksDP2OD008654 · OD · DUKE UNIVERSITY · PI BUCHLER, NICOLAS EMILE · 2011 to 2011
$2.4M
NIGMS NIH HHS P50 GM107615NIGMS NIH HHS R01 GM092925NIH HHS DP2 OD008654
6 · The paper itself

Abstract

Although cell cycle control is an ancient, conserved, and essential process, some core animal and fungal cell cycle regulators share no more sequence identity than non-homologous proteins. Here, we show that evolution along the fungal lineage was punctuated by the early acquisition and entrainment of the SBF transcription factor through horizontal gene transfer. Cell cycle evolution in the fungal ancestor then proceeded through a hybrid network containing both SBF and its ancestral animal counterpart E2F, which is still maintained in many basal fungi. We hypothesize that a virally-derived SBF may have initially hijacked cell cycle control by activating transcription via the cis-regulatory elements targeted by the ancestral cell cycle regulator E2F, much like extant viral oncogenes. Consistent with this hypothesis, we show that SBF can regulate promoters with E2F binding sites in budding yeast.

Indexed as

Cell CycleEvolution, MolecularCell Cycle ProteinsFungiGene Transfer, HorizontalTranscription FactorsCell Cycle ProteinsTranscription Factorscell cyclechytridcomputational biologyevolutionevolutionary biologyfungigenomicshorizontal gene transferS. cerevisiaesystems biologyvirus

Identifiers

PMID27162172
PMCPMC4862756
OpenAlexW2337163684

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.