Evidence map›Paper›PMID 27162138›Full record

ArticleThe Journal of experimental medicine2016

Ubiquitin-mediated fluctuations in MHC class II facilitate efficient germinal center B cell responses.

Oliver Bannard, Simon J McGowan, Jonatan Ersching, Satoshi Ishido, Gabriel D Victora, Jeoung-Sook Shin, Jason G Cyster

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
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  9. Review
  10. Review
  11. Article
  12. Ubiquitin Signaling in the Immune System.Advances in experimental medicine and biology · 2024
    Review
  13. Article
  14. Review
  15. Review
  16. The Ubiquitin Ligase Itch Skews Light Zone Selection in Germinal Centers.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. The biology of the tumor microenvironment in DLBCL: Targeting the "don't eat me" signal.Journal of clinical and experimental hematopathology : JCEH · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Oliver BannardMedical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, England, UK Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94143 Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143 oliver.bannard@ndm.ox.ac.uk jason.cyster@ucsf.edu.
Simon J McGowanComputational Biology Research Group, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, England, UK.
Jonatan ErschingWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Satoshi IshidoLaboratory of Integrative Infection Immunity, Showa Pharmaceutical University, Machida, Tokyo 194-8543, Japan.
Gabriel D VictoraWhitehead Institute for Biomedical Research, Cambridge, MA 02142.
Jeoung-Sook ShinDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143.
Jason G CysterHoward Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94143 Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143 oliver.bannard@ndm.ox.ac.uk jason.cyster@ucsf.edu.
University of California, San Francisco · USWhitehead Institute for Biomedical Research · USMedical Research Council · GBShowa Pharmaceutical University · JPUniversity of Oxford · GB

Funding

Chemokines and Lymphoid Tissue Organization and FunctionR01AI045073 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CYSTER, JASON G · 1999 to 2023
$7.6M
IN VIVO APPROACHES TO DISSECTING B CELL-T CELL COOPERATION IN GERMINAL CENTERSDP5OD012146 · OD · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI VICTORA, GABRIEL D · 2012 to 2016
$2.4M
Chemokines and Lymphoid Tissue Organization and FunctionR37AI045073 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason G Cyster · 2024 to 2026
$1.7M
Role of MARCH1 E3 ubiquitin ligase in thymic dendritic cell functionR01GM105800 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHIN, JEOUNG-SOOK · 2013 to 2017
$1.5M
Howard Hughes Medical InstituteMedical Research CouncilNIAID NIH HHS R01 AI045073NIAID NIH HHS R37 AI045073NIGMS NIH HHS R01 GM105800NIH HHS DP5 OD012146Wellcome TrustWellcome Trust 105654/Z/14/Z
6 · The paper itself

Abstract

Antibody affinity maturation occurs in germinal centers (GCs) through iterative rounds of somatic hypermutation and selection. Selection involves B cells competing for T cell help based on the amount of antigen they capture and present on their MHC class II (MHCII) proteins. How GC B cells are able to rapidly and repeatedly transition between mutating their B cell receptor genes and then being selected shortly after is not known. We report that MHCII surface levels and degradation are dynamically regulated in GC B cells. Through ectopic expression of a photoconvertible MHCII-mKikGR chimeric gene, we found that individual GC B cells differed in the rates of MHCII protein turnover. Fluctuations in surface MHCII levels were dependent on ubiquitination and the E3 ligase March1. Increases in March1 expression in centroblasts correlated with decreases in surface MHCII levels, whereas CD83 expression in centrocytes helped to stabilize MHCII at that stage. Defects in MHCII ubiquitination caused GC B cells to accumulate greater amounts of a specific peptide-MHCII (pMHCII), suggesting that MHCII turnover facilitates the replacement of old complexes. We propose that pMHCII complexes are periodically targeted for degradation in centroblasts to favor the presentation of recently acquired antigens, thereby promoting the fidelity and efficiency of selection.

Indexed as

ProteolysisAnimalsAntigens, CDB-LymphocytesCD83 AntigenGene Expression RegulationGerminal CenterHistocompatibility Antigens Class IIImmunoglobulinsMembrane GlycoproteinsMiceMice, KnockoutUbiquitinUbiquitinationUbiquitin-Protein LigasesAntigens, CDCD83 AntigenHistocompatibility Antigens Class IIImmunoglobulinsMARCH1 protein, mouseMembrane GlycoproteinsUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID27162138
PMCPMC4886361
OpenAlexW2345778582

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.