Evidence map›Paper›PMID 27161118›Full record

ArticleJournal of bacteriology2016

De Novo Guanine Biosynthesis but Not the Riboswitch-Regulated Purine Salvage Pathway Is Required for Staphylococcus aureus Infection In Vivo.

Eric M Kofoed, Donghong Yan, Anand K Katakam, Mike Reichelt, Baiwei Lin, Janice Kim, Summer Park, Shailesh V Date, Ian R Monk, Min Xu and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  10. Article
  11. Competition-cooperation mechanism betweenFrontiers in microbiology · 2023
    Article
  12. A Riboswitch-Driven Era of New Antibacterials.Antibiotics (Basel, Switzerland) · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Mutations in a Membrane Permease orAntimicrobial agents and chemotherapy · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Eric M KofoedInfectious Diseases Department, Genentech Inc., South San Francisco, California, USA kofoede@gene.com tan.man-wah@gene.com.
Donghong YanTranslational Immunology Department, Genentech Inc., South San Francisco, California, USA.
Anand K KatakamPathology Department, Genentech Inc., South San Francisco, California, USA.
Mike ReicheltPathology Department, Genentech Inc., South San Francisco, California, USA.
Baiwei LinStructural Biology Department, Genentech Inc., South San Francisco, California, USA.
Janice KimTranslational Immunology Department, Genentech Inc., South San Francisco, California, USA.
Summer ParkTranslational Immunology Department, Genentech Inc., South San Francisco, California, USA.
Shailesh V DateInfectious Diseases Department, Genentech Inc., South San Francisco, California, USA.
Ian R MonkDepartment of Microbiology and Immunology, University of Melbourne at the Doherty Institute for Infection and Immunity, Melbourne, Australia.
Min XuTranslational Immunology Department, Genentech Inc., South San Francisco, California, USA.
Cary D AustinPathology Department, Genentech Inc., South San Francisco, California, USA.
Till MaurerStructural Biology Department, Genentech Inc., South San Francisco, California, USA.
Man-Wah TanInfectious Diseases Department, Genentech Inc., South San Francisco, California, USA kofoede@gene.com tan.man-wah@gene.com.
Peter Doherty Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledDe novo guanine biosynthesis is an evolutionarily conserved pathway that creates sufficient nucleotides to support DNA replication, transcription, and translation. Bacteria can also salvage nutrients from the environment to supplement the de novo pathway, but the relative importance of either pathway during Staphylococcus aureus infection is not known. In S. aureus, genes important for both de novo and salvage pathways are regulated by a guanine riboswitch. Bacterial riboswitches have attracted attention as a novel class of antibacterial drug targets because they have high affinity for small molecules, are absent in humans, and regulate the expression of multiple genes, including those essential for cell viability. Genetic and biophysical methods confirm the existence of a bona fide guanine riboswitch upstream of an operon encoding xanthine phosphoribosyltransferase (xpt), xanthine permease (pbuX), inosine-5'-monophosphate dehydrogenase (guaB), and GMP synthetase (guaA) that represses the expression of these genes in response to guanine. We found that S. aureus guaB and guaA are also transcribed independently of riboswitch control by alternative promoter elements. Deletion of xpt-pbuX-guaB-guaA genes resulted in guanine auxotrophy, failure to grow in human serum, profound abnormalities in cell morphology, and avirulence in mouse infection models, whereas deletion of the purine salvage genes xpt-pbuX had none of these effects. Disruption of guaB or guaA recapitulates the xpt-pbuX-guaB-guaA deletion in vivo In total, the data demonstrate that targeting the guanine riboswitch alone is insufficient to treat S. aureus infections but that inhibition of guaA or guaB could have therapeutic utility. IMPORTANCE: De novo guanine biosynthesis and purine salvage genes were reported to be regulated by a guanine riboswitch in Staphylococcus aureus We demonstrate here that this is not true, because alternative promoter elements that uncouple the de novo pathway from riboswitch regulation were identified. We found that in animal models of infection, the purine salvage pathway is insufficient for S. aureus survival in the absence of de novo guanine biosynthesis. These data suggest targeting the de novo guanine biosynthesis pathway may have therapeutic utility in the treatment of S. aureus infections.

Indexed as

Gene Expression Regulation, BacterialRiboswitchAnimalsBacterial ProteinsFemaleGuanineHumansMicePurinesStaphylococcal InfectionsStaphylococcus aureusBacterial ProteinsGuaninePurinesRiboswitch

Identifiers

PMID27161118
PMCPMC4936099
OpenAlexW2346293078

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.