Evidence map›Paper›PMID 27159559›Full record

ArticleNature structural & molecular biology2016

Lactase nonpersistence is directed by DNA-variation-dependent epigenetic aging.

Viviane Labrie, Orion J Buske, Edward Oh, Richie Jeremian, Carolyn Ptak, Giedrius Gasiūnas, Almantas Maleckas, Rūta Petereit, Aida Žvirbliene, Kęstutis Adamonis and 11 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 95 citations in OpenAlex.

  1. Trial
  2. Observational
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  16. Plasticity-Led Evolution and Human Culture.Integrative psychological & behavioral science · 2021
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 3 countries.

Viviane LabrieKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Orion J BuskeDepartment of Computer Science, University of Toronto, Toronto, Ontario, Canada.
Edward OhKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Richie JeremianKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Carolyn PtakKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Giedrius GasiūnasDepartment of Protein-DNA Interactions, Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.
Almantas MaleckasDepartment of Surgery, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Rūta PetereitDepartment of Gastroenterology, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Aida ŽvirblieneDepartment of Gastroenterology, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Kęstutis AdamonisDepartment of Gastroenterology, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Edita KriukienėDepartment of Biological DNA Modification, Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.
Karolis KoncevičiusInstitute of Mathematics and Informatics, Vilnius University, Vilnius, Lithuania.
Juozas GordevičiusInstitute of Mathematics and Informatics, Vilnius University, Vilnius, Lithuania.
Akhil NairKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Aiping ZhangKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Sasha EbrahimiKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Gabriel OhKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Virginijus ŠikšnysDepartment of Protein-DNA Interactions, Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.
Limas KupčinskasDepartment of Gastroenterology, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Michael BrudnoDepartment of Computer Science, University of Toronto, Toronto, Ontario, Canada.
Arturas PetronisKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Centre for Addiction and Mental Health · CALithuanian University of Health Sciences · LTVilnius University · LTUniversity of Toronto · CA

Funding

DNA METHYLOME ANALYSIS IN BIPOLAR DISORDERR01MH088413 · NIMH · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI PETRONIS, ART · 2009 to 2013
$4.1M
DNA METHYLOME STUDY IN TYPE 1 DIABETESDP3DK085698 · NIDDK · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI PETRONIS, ART · 2009 to 2009
$3.1M
CIHR 200910MFE-211514-141430CIHR MOP-119451CIHR MOP-199170CIHR MOP-77689NIDDK NIH HHS DP3 DK085698NIMH NIH HHS R01 MH088413
6 · The paper itself

Abstract

The inability to digest lactose, due to lactase nonpersistence, is a common trait in adult mammals, except in certain human populations that exhibit lactase persistence. It is not known how the lactase gene is dramatically downregulated with age in most individuals but remains active in some individuals. We performed a comprehensive epigenetic study of human and mouse small intestines, by using chromosome-wide DNA-modification profiling and targeted bisulfite sequencing. Epigenetically controlled regulatory elements accounted for the differences in lactase mRNA levels among individuals, intestinal cell types and species. We confirmed the importance of these regulatory elements in modulating lactase mRNA levels by using CRISPR-Cas9-induced deletions. Genetic factors contribute to epigenetic changes occurring with age at the regulatory elements, because lactase-persistence and lactase-nonpersistence DNA haplotypes demonstrated markedly different epigenetic aging. Thus, genetic factors enable a gradual accumulation of epigenetic changes with age, thereby influencing phenotypic outcome.

Indexed as

Epigenesis, GeneticAdultAgedAgingAnimalsChromosomesCRISPR-Cas SystemsDNA MethylationHumansJejunumLactaseLactose IntoleranceMiceMice, Inbred C57BLMiddle AgedPromoter Regions, GeneticLactaseRNA, Messenger

Identifiers

PMID27159559
PMCPMC4899171
OpenAlexW2345650612

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.