Evidence map›Paper›PMID 27159321›Full record

ArticleAnnals of neurology2016

Whole exome sequencing in patients with white matter abnormalities.

Adeline Vanderver, Cas Simons, Guy Helman, Joanna Crawford, Nicole I Wolf, Geneviève Bernard, Amy Pizzino, Johanna L Schmidt, Asako Takanohashi, David Miller and 19 more

Registry-linked trialAbstract read
In one paragraph

Article in Annals of neurology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02699190 (LeukoSEQ), which is not on this map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02699190 completednot on this mapstarted 2017, after this paper: background citation

LeukoSEQ: Whole Genome Sequencing as a First-Line Diagnostic Tool for Leukodystrophies

TypeobservationalSponsorChildren's Hospital of PhiladelphiaRan2017 to 2024Enrolled236ConditionsLeukodystrophy, White Matter Disease, 4H Syndrome, Adrenoleukodystrophy
3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

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  15. Clinical case reports · 2024
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  19. Nucleotide metabolism, leukodystrophies, and CNS pathology.Journal of inherited metabolic disease · 2024
    Review
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Adeline VanderverDepartment of Neurology, Children's National Medical Center, Washington, DC.
Cas SimonsInstitute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.
Guy HelmanDepartment of Neurology, Children's National Medical Center, Washington, DC.ORCID http://orcid.org/0000-0002-4784-7423
Joanna CrawfordInstitute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.
Nicole I WolfDepartment of Child Neurology, VU University Medical Center and Neuroscience Campus Amsterdam, Amsterdam, the Netherlands.
Geneviève BernardDepartments of Pediatrics, Neurology, and Neurosurgery, Montreal Children's Hospital, McGill University Health Center, Montreal, Quebec, Canada.
Amy PizzinoDepartment of Neurology, Children's National Medical Center, Washington, DC.
Johanna L SchmidtDepartment of Neurology, Children's National Medical Center, Washington, DC.
Asako TakanohashiCenter for Genetic Medicine Research, Children's National Medical Center, Washington, DC.
David MillerInstitute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.
Amirah KhouzamIllumina Inc, San Diego, CA.
Vani RajanIllumina Inc, San Diego, CA.
Erica RamosIllumina Inc, San Diego, CA.
Shimul ChowdhuryIllumina Inc, San Diego, CA.
Tina HambuchIllumina Inc, San Diego, CA.
Kelin RuInstitute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.
Gregory J BaillieInstitute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.
Sean M GrimmondInstitute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.
Ljubica CaldovicCenter for Genetic Medicine Research, Children's National Medical Center, Washington, DC.
Joseph DevaneyCenter for Genetic Medicine Research, Children's National Medical Center, Washington, DC.
Miriam BloomDepartment of Pediatrics, Children's National Medical Center, Washington, DC.
Sarah H EvansDepartment of Physical Medicine and Rehabilitation, Children's National Medical Center, Washington, DC.
Jennifer L P MurphyDepartment of Neurology, Children's National Medical Center, Washington, DC.
Nathan McNeillInstitute for Metabolic Disease, Baylor Research Institute, Dallas, TX.
Brent L FogelDepartment of Neurology, Program in Neurogenetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA.
Leukodystrophy Study Group
Raphael SchiffmannInstitute for Metabolic Disease, Baylor Research Institute, Dallas, TX.
Marjo S van der KnaapDepartment of Child Neurology, VU University Medical Center and Neuroscience Campus Amsterdam, Amsterdam, the Netherlands.
Ryan J TaftSchool of Medicine and Health Sciences, George Washington University, Washington, DC.

Funding

Clinical and Translational Science Institute at Children's NationalUL1TR000075 · NCATS · CHILDREN'S RESEARCH INSTITUTE · PI GUAY-WOODFORD, LISA MARIE · 2012 to 2015
$13.7M
Research_ProjectU54HD090257 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI GUAY-WOODFORD, LISA MARIE · 2016 to 2020
$5.9M
Rare and Novel Genetic Variation in the Pathogenesis of Cerebellar AtaxiaR01NS082094 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FOGEL, BRENT LINDEN · 2013 to 2017
$1.7M
The Role of Fox-1 in Neurodevelopment and Autistic Spectrum DisorderK08MH086297 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FOGEL, BRENT LINDEN · 2009 to 2013
$719k
Molecular Mechanisms in Vanishing White Matter DiseaseK08NS060695 · NINDS · CHILDREN'S RESEARCH INSTITUTE · PI VANDERVER, ADELINE LUCIE · 2009 to 2013
$643k
NCATS NIH HHS UL1 TR000075NICHD NIH HHS U54 HD090257NIMH NIH HHS K08 MH086297NINDS NIH HHS K08 NS060695NINDS NIH HHS R01 NS082094
6 · The paper itself

Abstract

Here we report whole exome sequencing (WES) on a cohort of 71 patients with persistently unresolved white matter abnormalities with a suspected diagnosis of leukodystrophy or genetic leukoencephalopathy. WES analyses were performed on trio, or greater, family groups. Diagnostic pathogenic variants were identified in 35% (25 of 71) of patients. Potentially pathogenic variants were identified in clinically relevant genes in a further 7% (5 of 71) of cases, giving a total yield of clinical diagnoses in 42% of individuals. These findings provide evidence that WES can substantially decrease the number of unresolved white matter cases. Ann Neurol 2016;79:1031-1037.

Indexed as

DNA Mutational AnalysisAdolescentAdultChildChild, PreschoolExomeFemaleHumansLeukoencephalopathiesMaleMutationWhite MatterYoung Adult

Identifiers

PMID27159321
PMCPMC5354169

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.