Evidence map›Paper›PMID 27159132›Full record

ArticleEuropean journal of immunology2016

Alterations to chromatin in intestinal macrophages link IL-10 deficiency to inappropriate inflammatory responses.

Jeremy M Simon, James P Davis, Saangyoung E Lee, Matthew R Schaner, Gregory R Gipson, Matthew Weiser, R Balfour Sartor, Hans H Herfarth, Reza Rahbar, Timothy S Sadiq and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Frontiers in nutrition · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Redefining the IBDs using genome-scale molecular phenotyping.Nature reviews. Gastroenterology & hepatology · 2019
    Review
  15. Article
  16. Functional macrophages and gastrointestinal disorders.World journal of gastroenterology · 2018
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 3 countries.

Jeremy M SimonDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
James P DavisDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Saangyoung E LeeDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Matthew R SchanerDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Gregory R GipsonDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Matthew WeiserDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
R Balfour SartorCenter for Gastrointestinal Biology and Disease, University of North Carolina, Chapel Hill, NC, USA.
Hans H HerfarthCenter for Gastrointestinal Biology and Disease, University of North Carolina, Chapel Hill, NC, USA.
Reza RahbarDepartment of Surgery, University of North Carolina, Chapel Hill, NC, USA.
Timothy S SadiqDepartment of Surgery, University of North Carolina, Chapel Hill, NC, USA.
Mark J KorudaDepartment of Surgery, University of North Carolina, Chapel Hill, NC, USA.
Dermot P McGovernF. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Jason D LiebDepartment of Human Genetics, University of Chicago, IL, USA.
Karen L MohlkeDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Terrence S FureyDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Shehzad Z SheikhDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
University of North Carolina at Chapel Hill · USCedars-Sinai Medical Center · USUniversity of Chicago · US

Funding

PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
Role of IL-10 in APC Regulation of Protective vs. Pathogenic T Cell Responses toP01DK094779 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHEIKH, SHEHZAD Z. · 2013 to 2023
$17.9M
Targeted Genetic Analysis of T2D and Quantitative TraitsR01DK072193 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN L. MOHLKE · 2005 to 2026
$11.3M
Genetic epidemiology of rare and regulatory variants for metabolic traitsR01DK093757 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN L. MOHLKE · 2011 to 2026
$8.2M
Integrative Genetic and Genomic Analyses in the Inflammatory Bowel DiseaseR01DK104828 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FUREY, TERRENCE S., SHEIKH, SHEHZAD Z. · 2016 to 2018
$901k
Interpreting molecular role of DNA variants associated with Crohn's Disease through integrative analysis of open chromatin, epigenome and transcriptome data in diverse and relevant tissues and cellsR01ES024983 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FUREY, TERRENCE S., SHEIKH, SHEHZAD Z. · 2014 to 2015
$588k
NIDDK NIH HHS P01 DK094779NIDDK NIH HHS P30 DK034987NIDDK NIH HHS R01 DK072193NIDDK NIH HHS R01 DK093757NIDDK NIH HHS R01 DK104828NIEHS NIH HHS R01 ES024983
6 · The paper itself

Abstract

Intestinal macrophages (IMs) are uniquely programmed to tolerate exposure to bacteria without mounting potent inflammatory responses. The cytokine IL-10 maintains the macrophage anti-inflammatory response such that loss of IL-10 results in chronic intestinal inflammation. To investigate how IL-10-deficiency alters IM programming and bacterial tolerance, we studied changes in chromatin accessibility in response to bacteria in macrophages from two distinct niches, the intestine and bone-marrow, from both wild-type and IL-10-deficient (Il10(-/-) ) mice. We identified chromatin accessibility changes associated with bacterial exposure and IL-10 deficiency in both bone marrow derived macrophages and IMs. Surprisingly, Il10(-/-) IMs adopted chromatin and gene expression patterns characteristic of an inflammatory response, even in the absence of bacteria. Further, when recombinant IL-10 was added to Il10(-/-) cells, it could not revert the chromatin landscape to a normal state. Our results demonstrate that IL-10 deficiency results in stable chromatin alterations in macrophages, even in the absence of bacteria. This supports a model in which IL-10-deficiency leads to chromatin alterations that contribute to a loss of IM tolerance to bacteria, which is a primary initiating event in chronic intestinal inflammation.

Indexed as

AnimalsChromatinCytokinesElectrophoretic Mobility Shift AssayGene ExpressionHumansImmune ToleranceInflammationInterleukin-10IntestinesMacrophagesMiceMice, Inbred C57BLMice, KnockoutChromatinCytokinesIL10 protein, humanIL10 protein, mouseInterleukin-10Chromatin accessibilityChronic inflammationIL-10Inflammatory bowel diseaseMacrophages

Identifiers

PMID27159132
PMCPMC5486994
OpenAlexW2345438764

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.