Evidence map›Paper›PMID 27159028›Full record

ArticleHuman mutation2016

Identification of Intellectual Disability Genes in Female Patients with a Skewed X-Inactivation Pattern.

Nathalie Fieremans, Hilde Van Esch, Maureen Holvoet, Gert Van Goethem, Koenraad Devriendt, Monica Rosello, Sonia Mayo, Francisco Martinez, Shalini Jhangiani, Donna M Muzny and 5 more

Abstract read
In one paragraph

Article in Human mutation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
9.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 126 citations in OpenAlex.

  1. Systematic review of CMTX1 patients with episodic neurological dysfunction.Annals of clinical and translational neurology · 2021
    Pooled it
  2. Review
  3. Article
  4. Emerging role ofFrontiers in molecular neuroscience · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
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  13. Stochasticity in genetics and gene regulation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  14. Article
  15. Article
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  18. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Nathalie FieremansHuman Genome Laboratory, Department of Human Genetics, KU Leuven, Belgium.
Hilde Van EschCenter for Human Genetics, University Hospitals Leuven, KU Leuven, Leuven, Belgium.
Maureen HolvoetCenter for Human Genetics, University Hospitals Leuven, KU Leuven, Leuven, Belgium.
Gert Van GoethemHet GielsBos, Gierle, Belgium and Department of Neurology, University Hospital of Antwerp (UZA), Antwerp, Belgium.
Koenraad DevriendtCenter for Human Genetics, University Hospitals Leuven, KU Leuven, Leuven, Belgium.
Monica RoselloGenetics Unit, Hospital Universitario y Politecnico La Fe, Valencia, Spain.
Sonia MayoGenetics Unit, Hospital Universitario y Politecnico La Fe, Valencia, Spain.
Francisco MartinezGenetics Unit, Hospital Universitario y Politecnico La Fe, Valencia, Spain.
Shalini JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
James R LupskiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Joris R VermeeschCenter for Human Genetics, University Hospitals Leuven, KU Leuven, Leuven, Belgium.
Peter MarynenHuman Genome Laboratory, Department of Human Genetics, KU Leuven, Belgium.
Guy FroyenHuman Genome Laboratory, Department of Human Genetics, KU Leuven, Belgium.
KU Leuven · BEBaylor College of Medicine · USHospital Universitari i Politècnic La Fe · ESCenter for Human Genetics · USAntwerp University Hospital · BETexas Children's Hospital · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
NHGRI NIH HHS U54 HG006542NHGRI NIH HHS UM1 HG006542
6 · The paper itself

Abstract

Intellectual disability (ID) is a heterogeneous disorder with an unknown molecular etiology in many cases. Previously, X-linked ID (XLID) studies focused on males because of the hemizygous state of their X chromosome. Carrier females are generally unaffected because of the presence of a second normal allele, or inactivation of the mutant X chromosome in most of their cells (skewing). However, in female ID patients, we hypothesized that the presence of skewing of X-inactivation would be an indicator for an X chromosomal ID cause. We analyzed the X-inactivation patterns of 288 females with ID, and found that 22 (7.6%) had extreme skewing (>90%), which is significantly higher than observed in the general population (3.6%; P = 0.029). Whole-exome sequencing of 19 females with extreme skewing revealed causal variants in six females in the XLID genes DDX3X, NHS, WDR45, MECP2, and SMC1A. Interestingly, variants in genes escaping X-inactivation presumably cause both XLID and skewing of X-inactivation in three of these patients. Moreover, variants likely accounting for skewing only were detected in MED12, HDAC8, and TAF9B. All tested candidate causative variants were de novo events. Hence, extreme skewing is a good indicator for the presence of X-linked variants in female patients.

Indexed as

Genetic VariationX Chromosome InactivationCarrier ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneDEAD-box RNA HelicasesExomeFemaleHumansIntellectual DisabilityMembrane ProteinsMethyl-CpG-Binding Protein 2Nuclear ProteinsSequence Analysis, DNAStructural Maintenance of Chromosome Protein 1Carrier ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneDDX3X protein, humanDEAD-box RNA HelicasesMECP2 protein, humanMembrane ProteinsMethyl-CpG-Binding Protein 2NHS protein, humanNuclear ProteinsStructural Maintenance of Chromosome Protein 1WDR45 protein, humanescape genesexome sequencingintellectual disabilityskewing of X-inactivation

Identifiers

PMID27159028
PMCPMC4940233
OpenAlexW2345799841

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.