ArticleNature genetics2016
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.
Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 247 papers.
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247 citing papers in PubMed.
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- Dissecting flowering time and flower color in Carum carvi utilizing a long-read draft genome and a GBS-based QTL mapping.Scientific reports · 2026Article
- Genome-wide in-silico characterization and expression pattern analysis of GATA transcription factor family in carrot (Daucus carota subsp. sativus).Functional & integrative genomics · 2026Article
- Genome-Wide Characterization of theLife (Basel, Switzerland) · 2026Article
- Deciphering flavonoids and terpenoids biosynthesis through chromosomal-level genome, metabolome, and transcriptome integration inHorticulture research · 2026Article
- An OsGLK1/2-DGP1/2/3 feedback module regulates rice photosynthesis and yield.Science advances · 2026Article
- Transcriptome dataset of different carrot genotypes during various developmental stages of callus.Data in brief · 2026Article
- Genome-wide identification and promoter activity analysis of fibrillin gene families in different color carrot roots.Protoplasma · 2026Article
- Chromosome-level genome assembly of Youngia japonica reveals evolutionary dynamics underlying adaptation in a synanthropic Asteraceae species.BMC plant biology · 2026Article
- Using reciprocally retained gene families to detect whole-genome multiplications in plants.Genome biology · 2026Article
- Evolutionary History, Transcriptome Expression Profiles, and Abiotic Stress Responses of theInternational journal of molecular sciences · 2026Article
- Genome-wide identification, classification, and expression pattern analysis of the TCP transcription factor family in carrot.Frontiers in plant science · 2026Article
- Mitochondrial genome assembly of the Peruvian Paso horse through PacBio long-read sequencing.Scientific reports · 2025Article
- Genome-wide association study to dissect the genetic architecture of bolting-related traits in carrot (Daucus carota).Scientific reports · 2025Article
- Analysis of Pigmentation Changes in Bracts ofBiology · 2025Article
- Assembling the chromosome-level genome of Arctium Lappa L. provides new insights into carotenoid biosynthesis.BMC plant biology · 2025Article
- Analysis of telomere-to-telomere genome of red carrot TXH4 elucidates the role of DcLCYE and DcLCYB1 in lycopene accumulation in carrot.Horticulture research · 2025Article
- Editing of rice PSEUDO-ETIOLATION IN LIGHT microProtein genes promotes chloroplast development.The Plant cell · 2025Article
- Telomere-to-telomere genome assembly of yellow-fruited allotetraploid American ginseng (Horticulture research · 2025Article
- The Known Unknowns: An Enigmatic Pathway of CCurrent issues in molecular biology · 2025Review
187 more citing papers are in PubMed but not listed here.
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21 authors.
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Abstract
We report a high-quality chromosome-scale assembly and analysis of the carrot (Daucus carota) genome, the first sequenced genome to include a comparative evolutionary analysis among members of the euasterid II clade. We characterized two new polyploidization events, both occurring after the divergence of carrot from members of the Asterales order, clarifying the evolutionary scenario before and after radiation of the two main asterid clades. Large- and small-scale lineage-specific duplications have contributed to the expansion of gene families, including those with roles in flowering time, defense response, flavor, and pigment accumulation. We identified a candidate gene, DCAR_032551, that conditions carotenoid accumulation (Y) in carrot taproot and is coexpressed with several isoprenoid biosynthetic genes. The primary mechanism regulating carotenoid accumulation in carrot taproot is not at the biosynthetic level. We hypothesize that DCAR_032551 regulates upstream photosystem development and functional processes, including photomorphogenesis and root de-etiolation.
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