Evidence map›Paper›PMID 27157862›Full record

ArticleAnnals of epidemiology2016

The effects of family, dentition, and dental caries on the salivary microbiome.

Betsy Foxman, Ting Luo, Usha Srinivasan, Kirtana Ramadugu, Ai Wen, Deborah Goldberg, Kerby Shedden, Richard Crout, Daniel W McNeil, Robert Weyant and 1 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Annals of epidemiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 31 citations in OpenAlex.

  1. Meta-analysis of caries microbiome studies can improve upon disease prediction outcomes.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2022
    Pooled it
  2. Meta-Analysis Using NGS Data: TheFrontiers in oral health · 2021
    Pooled it
  3. Article
  4. Article
  5. Review
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  9. Review
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  12. Caries Increment and Salivary Microbiome during University Life: A Prospective Cohort Study.International journal of environmental research and public health · 2020
    Article
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  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Epidemiology and the microbiome.Annals of epidemiology · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Betsy FoxmanDepartment of Epidemiology, University of Michigan, Ann Arbor. Electronic address: bfoxman@umich.edu.
Ting LuoDepartment of Epidemiology, University of Michigan, Ann Arbor.
Usha SrinivasanDepartment of Epidemiology, University of Michigan, Ann Arbor.
Kirtana RamaduguDepartment of Epidemiology, University of Michigan, Ann Arbor.
Ai WenDepartment of Biology, University of Northern Iowa.
Deborah GoldbergDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor.
Kerby SheddenDepartments of Statistics and Biostatistics, University of Michigan, Ann Arbor.
Richard CroutDepartment of Periodontics, West Virginia University, Morgantown; Center for Craniofacial and Dental Genetics, University of Pittsburgh, Pittsburgh, PA.
Daniel W McNeilCenter for Craniofacial and Dental Genetics, University of Pittsburgh, Pittsburgh, PA; Department of Psychology, West Virginia University, Morgantown.
Robert WeyantCenter for Craniofacial and Dental Genetics, University of Pittsburgh, Pittsburgh, PA.
Mary L MarazitaCenter for Craniofacial and Dental Genetics, University of Pittsburgh, Pittsburgh, PA.
University of Michigan · USUniversity of Pittsburgh · USUniversity of Northern Iowa · USWest Virginia University · US

Funding

Psychosocial Influences on Rural Children's Oral HealthR01DE014899 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FOXMAN, BETSY, MARAZITA, MARY L. · 2002 to 2020
$39.9M
NIDCR NIH HHS R01 DE014899
6 · The paper itself

Abstract

purposeFamily members share genes, environment, and microbial communities. If there is a strong effect of family on the salivary microbiota, controlling for family will enhance identification of microbial communities associated with cariogenesis. The present study was designed to assess the similarity of the salivary microbiome among families and the association between the salivary microbiome and dental decay taking age into account.

methodsWe selected families (n = 49) participating in the cohort study of oral health conducted by the Center for Oral Health Research in Appalachia. All families where at least two children and at least one parent gave a saliva sample (n = 173) were included. Saliva samples were collected at least 1 hour after eating or drinking. After DNA extraction, the V6 region of the 16s rRNA gene was sequenced. Paired ends were joined using fast length adjustment of short reads, sequences were demultiplexed and filtered using Quantitative Insights Into Microbial Ecology 1.9.0, and taxonomy was assigned using the Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/) classifier and sequences aligned with the CORE database using PyNAST.

resultsThe salivary microbiome changed with age and was more similar within families than between families. There was no difference in the diversity of the salivary microbiome by dental decay. After taking into account age and family, signals of dental decay were weak in the saliva, whether examined at the phyla, genus, or operational taxonomic level.

conclusionsThe salivary microbiome does not appear to be a good indicator of dental caries.

Indexed as

DentitionOral HealthAdolescentAdultAgingAppalachian RegionChildChild, PreschoolCohort StudiesDental CariesFamilyFemaleGenetic Predisposition to DiseaseHumansMaleMicrobiotaRNA, Ribosomal, 16SDental cariesFamilySalivary microbiome

Identifiers

PMID27157862
PMCPMC5015694
OpenAlexW2331190431

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.