Evidence map›Paper›PMID 27156733›Full record

ArticleScientific reports2016

N(6)-Methyladenosine: a conformational marker that regulates the substrate specificity of human demethylases FTO and ALKBH5.

Shui Zou, Joel D W Toh, Kendra H Q Wong, Yong-Gui Gao, Wanjin Hong, Esther C Y Woon

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed.

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  18. Recruitment of the mGenome biology · 2024
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  19. Progression of mCell death discovery · 2024
    Review
  20. Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shui ZouDepartment of Pharmacy, National University of Singapore, 18 Science Drive 4, Singapore 117 543, Singapore.
Joel D W TohDepartment of Pharmacy, National University of Singapore, 18 Science Drive 4, Singapore 117 543, Singapore.
Kendra H Q WongDepartment of Pharmacy, National University of Singapore, 18 Science Drive 4, Singapore 117 543, Singapore.
Yong-Gui GaoInstitute of Molecular and Cell Biology, 61 Biopolis Drive, Proteos, Singapore 138 673, Singapore.
Wanjin HongInstitute of Molecular and Cell Biology, 61 Biopolis Drive, Proteos, Singapore 138 673, Singapore.
Esther C Y WoonDepartment of Pharmacy, National University of Singapore, 18 Science Drive 4, Singapore 117 543, Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N(6)-Methyladenosine (m6A) is currently one of the most intensively studied post-transcriptional modifications in RNA. Due to its critical role in epigenetics and physiological links to several human diseases, it is also of tremendous biological and medical interest. The m6A mark is dynamically reversed by human demethylases FTO and ALKBH5, however the mechanism by which these enzymes selectively recognise their target transcripts remains unclear. Here, we report combined biophysical and biochemical studies on the specificity determinants of m6A demethylases, which led to the identification of an m6A-mediated substrate discrimination mechanism. Our results reveal that m6A itself serves as a 'conformational marker', which induces different conformational outcomes in RNAs depending on sequence context. This critically impacts its interactions with several m6A-recognising proteins, including FTO and ALKBH5. Remarkably, through the RNA-remodelling effects of m6A, the demethylases were able to discriminate substrates with very similar nucleotide sequences. Our findings provide novel insights into the biological functions of m6A modifications. The mechanism identified in this work is likely of significance to other m6A-recognising proteins.

Indexed as

AdenosineAlkB Homolog 5, RNA DemethylaseAlpha-Ketoglutarate-Dependent Dioxygenase FTOAmino Acid MotifsBase SequenceBiocatalysisConsensus SequenceDemethylationHumansOxidation-ReductionProtein ConformationRNARNA StabilitySubstrate SpecificityThermodynamicsAdenosineALKBH5 protein, humanAlkB Homolog 5, RNA DemethylaseAlpha-Ketoglutarate-Dependent Dioxygenase FTOFTO protein, humanN-methyladenosineRNA

Identifiers

PMID27156733
PMCPMC4860565

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.