Evidence map›Paper›PMID 27156452›Full record

ArticleCell2016

Distinct Gene Regulatory Pathways for Human Innate versus Adaptive Lymphoid Cells.

Olivia I Koues, Patrick L Collins, Marina Cella, Michelle L Robinette, Sofia I Porter, Sarah C Pyfrom, Jacqueline E Payton, Marco Colonna, Eugene M Oltz

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed, 162 citations in OpenAlex.

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62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Olivia I KouesDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Patrick L CollinsDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Marina CellaDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Michelle L RobinetteDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Sofia I PorterDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Sarah C PyfromDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Jacqueline E PaytonDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Marco ColonnaDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA. Electronic address: mcolonna@pathology.wustl.edu.
Eugene M OltzDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA. Electronic address: eoltz@wustl.edu.
Washington University in St. Louis · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
Mucosal Immune Defense Mechanisms of the Urinary BladderU01AI095542 · NIAID · WASHINGTON UNIVERSITY · PI COLONNA, MARCO, HULTGREN, SCOTT J. · 2011 to 2020
$9.8M
TOPOLOGICAL MECHANISMS OF DNA BREAK REPAIR IN LYMPHOCYTESR37AI118852 · NIAID · OHIO STATE UNIVERSITY · PI Eugene M Oltz · 2021 to 2026
$2.8M
TOPOLOGICAL MECHANISMS OF DNA BREAK REPAIR IN LYMPHOCYTESR01AI118852 · NIAID · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M · 2015 to 2019
$1.9M
THE ROLE OF NK-22 CELLS IN ANTI-HIV-1 MUCOSAL IMMUNITYR01DE021255 · NIDCR · WASHINGTON UNIVERSITY · PI COLONNA, MARCO · 2010 to 2014
$1.9M
SEQUENCE-SPECIFIC CHROMATIN MODIFIERS; NOVEL PROTEIN THERAPEUTICS FOR B CELL LYMPHOMAR01CA188286 · NCI · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M, PAYTON, JACQUELINE E. · 2015 to 2019
$1.7M
IL-22 IN OBESITY AND OBESITY-ASSOCIATED CANCERR01CA176695 · NCI · WASHINGTON UNIVERSITY · PI CELLA, MARINA · 2013 to 2017
$1.6M
Cis-Regulatory Circuits for ILC Function and PlasticityR56AI134035 · NIAID · WASHINGTON UNIVERSITY · PI COLONNA, MARCO, OLTZ, EUGENE M · 2017 to 2017
$621k
CHROMATIN-BASED DISCOVERY OF ILC GENE REGULATORY CIRCUITSR21AI120606 · NIAID · WASHINGTON UNIVERSITY · PI COLONNA, MARCO, OLTZ, EUGENE M · 2015 to 2016
$419k
CHROMATIN-BASED DISCOVERY AND FUNCTION OF NOVEL TCR REGULATORY ELEMENTSR21AI115734 · NIAID · WASHINGTON UNIVERSITY · PI ARTOMOV, MAKSYM, OLTZ, EUGENE M · 2015 to 2016
$419k
NCATS NIH HHS UL1 TR000448NCI NIH HHS P30 CA091842NCI NIH HHS R01 CA176695NCI NIH HHS R01 CA188286NIAID NIH HHS R01 AI118852NIAID NIH HHS R21 AI115734NIAID NIH HHS R21 AI120606NIAID NIH HHS R37 AI118852NIAID NIH HHS R56 AI134035NIAID NIH HHS U01 AI095542NIDCR NIH HHS R01 DE021255NIGMS NIH HHS T32 GM007067
6 · The paper itself

Abstract

Innate lymphoid cells (ILCs) serve as sentinels in mucosal tissues, sensing release of soluble inflammatory mediators, rapidly communicating danger via cytokine secretion, and functioning as guardians of tissue homeostasis. Although ILCs have been extensively studied in model organisms, little is known about these "first responders" in humans, especially their lineage and functional kinships to cytokine-secreting T helper (Th) cell counterparts. Here, we report gene regulatory circuitries for four human ILC-Th counterparts derived from mucosal environments, revealing that each ILC subset diverges as a distinct lineage from Th and circulating natural killer cells but shares circuitry devoted to functional polarization with their Th counterparts. Super-enhancers demarcate cohorts of cell-identity genes in each lineage, uncovering new modes of regulation for signature cytokines, new molecules that likely impart important functions to ILCs, and potential mechanisms for autoimmune disease SNP associations within ILC-Th subsets.

Indexed as

Adaptive ImmunityAnimalsCytokinesEnhancer Elements, GeneticHumansImmunity, InnateImmunity, MucosalKiller Cells, NaturalLymphocytesMicePalatine TonsilT-Lymphocytes, Helper-InducerTranscription FactorsTranscriptomeCytokinesTranscription Factors

Identifiers

PMID27156452
PMCPMC4874868
OpenAlexW2346568379

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.