Evidence map›Paper›PMID 27154906›Full record

ArticleThe journals of gerontology. Series A, Biological sciences and medical sciences2017

Exome-wide Association Study Identifies CLEC3B Missense Variant p.S106G as Being Associated With Extreme Longevity in East Asian Populations.

Kumpei Tanisawa, Yasumichi Arai, Nobuyoshi Hirose, Hiroshi Shimokata, Yoshiji Yamada, Hisashi Kawai, Motonaga Kojima, Shuichi Obuchi, Hirohiko Hirano, Hideyo Yoshida and 13 more

Abstract read
In one paragraph

Article in The journals of gerontology. Series A, Biological sciences and medical sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Journal of inflammation research · 2025
    Article
  4. Review
  5. Article
  6. Exome-Wide Association Study Identifies FN3KRP and PGP as New Candidate Longevity Genes.The journals of gerontology. Series A, Biological sciences and medical sciences · 2021
    Article
  7. CLEC3B p.S106G Mutant in a Caucasian Population of Successful Neurological Aging.The journals of gerontology. Series A, Biological sciences and medical sciences · 2020
    Article
  8. Dampening the Power of the Brain-When Aging Meets Cognition.The journals of gerontology. Series A, Biological sciences and medical sciences · 2020
    Article
  9. Article
  10. Article
  11. CLEC3B protects H9c2 cardiomyocytes from apoptosis caused by hypoxia via the PI3K/Akt pathway.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2020
    Article
  12. Whole-Exome Sequencing of an Exceptional Longevity Cohort.The journals of gerontology. Series A, Biological sciences and medical sciences · 2019
    Article
  13. Article
  14. C-type lectins in immunity and homeostasis.Nature reviews. Immunology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Kumpei TanisawaDepartment of Genomics for Longevity and Health, Tokyo Metropolitan Institute of Gerontology, Japan.
Yasumichi AraiCenter for Supercentenarian Research, Keio University School of Medicine, Tokyo, Japan.
Nobuyoshi HiroseCenter for Supercentenarian Research, Keio University School of Medicine, Tokyo, Japan.
Hiroshi ShimokataSection of Longitudinal Study of Aging, National Institute for Longevity Sciences (NILS-LSA), National Center for Geriatrics and Gerontology, Obu, Japan.
Yoshiji YamadaDepartment of Human Functional Genomics, Life Science Research Center, Mie University, Tsu, Japan.
Hisashi KawaiHuman Care Research Team, Tokyo Metropolitan Institute of Gerontology, Japan.
Motonaga KojimaHuman Care Research Team, Tokyo Metropolitan Institute of Gerontology, Japan.
Shuichi ObuchiHuman Care Research Team, Tokyo Metropolitan Institute of Gerontology, Japan.
Hirohiko HiranoResearch Team for Promoting Independence of the Elderly, Tokyo Metropolitan Institute of Gerontology, Japan.
Hideyo YoshidaResearch Team for Promoting Independence of the Elderly, Tokyo Metropolitan Institute of Gerontology, Japan.
Hiroyuki SuzukiResearch Team for Social Participation and Community Health, Tokyo Metropolitan Institute of Gerontology, Japan.
Yoshinori FujiwaraResearch Team for Social Participation and Community Health, Tokyo Metropolitan Institute of Gerontology, Japan.
Kazushige IharaDepartment of Public Health, Toho University School of Medicine, Tokyo, Japan.
Maki SugayaDepartment of Genomics for Longevity and Health, Tokyo Metropolitan Institute of Gerontology, Japan.
Tomio AraiDepartment of Pathology, Tokyo Metropolitan Geriatric Hospital, Japan.
Seijiro MoriCenter for Promotion of Clinical Investigation, Tokyo Metropolitan Geriatric Hospital, Japan.
Motoji SawabeSection of Molecular Pathology, Graduate School of Health Care Sciences, Tokyo Medical and Dental University, Japan.
Noriko SatoDepartment of Molecular Epidemiology, Medical Research Institute, Tokyo Medical and Dental University, Japan.
Masaaki MuramatsuDepartment of Molecular Epidemiology, Medical Research Institute, Tokyo Medical and Dental University, Japan.
Mitsuru HiguchiFaculty of Sport Sciences, Waseda University, Tokorozawa, Japan.
Yao-Wen LiuState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, China.
Qing-Peng KongState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, China.
Masashi TanakaDepartment of Clinical Laboratory, Tokyo Metropolitan Geriatric Hospital, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Life span is a complex trait regulated by multiple genetic and environmental factors; however, the genetic determinants of extreme longevity have been largely unknown. To identify the functional coding variants associated with extreme longevity, we performed an exome-wide association study (EWAS) on a Japanese population by using an Illumina HumanExome Beadchip and a focused replication study on a Chinese population. The EWAS on two independent Japanese cohorts consisting of 530 nonagenarians/centenarians demonstrated that the G allele of CLEC3B missense variant p.S106G was associated with extreme longevity at the exome-wide level of significance (p = 2.33×10-7, odds ratio [OR] = 1.50). The CLEC3B gene encodes tetranectin, a protein implicated in the mineralization process in osteogenesis as well as in the prognosis and metastasis of cancer. The replication study consisting of 448 Chinese nonagenarians/centenarians showed that the G allele of CLEC3B p.S106G was also associated with extreme longevity (p = .027, OR = 1.51), and the p value of this variant reached 1.87×10-8 in the meta-analysis of Japanese and Chinese populations. In conclusion, the present study identified the CLEC3B p.S106G as a novel longevity-associated variant, raising the novel hypothesis that tetranectin, encoded by CLEC3B, plays a role in human longevity and aging.

Indexed as

AdultAgedAged, 80 and overAsian PeopleExomeFemaleGenetic VariationGenome-Wide Association StudyHumansLectins, C-TypeLongevityMaleMiddle AgedLectins, C-TypetetranectinCentenarianHuman agingHuman geneticsLongevity

Identifiers

PMID27154906
PMCPMC5861862

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.