Evidence map›Paper›PMID 27153398›Full record

ArticleAmerican journal of human genetics2016

Mutations in DNMT3B Modify Epigenetic Repression of the D4Z4 Repeat and the Penetrance of Facioscapulohumeral Dystrophy.

Marlinde L van den Boogaard, Richard J L F Lemmers, Judit Balog, Mariëlle Wohlgemuth, Mari Auranen, Satomi Mitsuhashi, Patrick J van der Vliet, Kirsten R Straasheijm, Rob F P van den Akker, Marjolein Kriek and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 173 papers.

0numbers the graph read from it
0cells of the map it votes in
173citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

173 citing papers in PubMed, 263 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Observational
  14. Review
  15. Muscle-specific increased expression ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Review
  17. All-in-one vectors for epigenetic CRISPR inhibition ofMolecular therapy. Methods & clinical development · 2025
    Article
  18. Article
  19. Review
  20. Review

113 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 4 countries.

Marlinde L van den BoogaardDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Richard J L F LemmersDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Judit BalogDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Mariëlle WohlgemuthDepartment of Neurology, Radboud University Medical Center, 6500 HB Nijmegen, the Netherlands.
Mari AuranenClinical Neurosciences, Neurology, University of Helsinki and Helsinki University Hospital, 00029 Helsinki, Finland.
Satomi MitsuhashiDepartment of Neuromuscular Research, National Institute of Neuroscience, National Center of Neurology and Psychiatry, Tokyo 187-8502, Japan.
Patrick J van der VlietDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Kirsten R StraasheijmDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Rob F P van den AkkerDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Marjolein KriekDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands; Department of Clinical Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Marlies E Y Laurense-BikDepartment of Clinical Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Vered RazDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Monique M van Ostaijen-Ten DamDepartment of Pediatrics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Kerstin B M HanssonDepartment of Clinical Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Elly L van der KooiMedisch Centrum Leeuwarden, 8934AD, Leeuwarden, the Netherlands.
Sari Kiuru-EnariClinical Neurosciences, Neurology, University of Helsinki and Helsinki University Hospital, 00029 Helsinki, Finland.
Bjarne UddNeuromuscular Research Center, Department of Neurology, Tampere University Hospital and University of Tampere, 33520 Tampere, Finland.
Maarten J D van TolDepartment of Pediatrics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.
Ichizo NishinoDepartment of Neuromuscular Research, National Institute of Neuroscience, National Center of Neurology and Psychiatry, Tokyo 187-8502, Japan.
Rabi TawilDepartment of Neurology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Stephen J TapscottDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Baziel G M van EngelenDepartment of Neurology, Radboud University Medical Center, 6500 HB Nijmegen, the Netherlands.
Silvère M van der MaarelDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands. Electronic address: s.m.van_der_maarel@lumc.nl.
Leiden University Medical Center · NLNational Center of Neurology and Psychiatry · JPRadboud University Nijmegen · NLUniversity of Helsinki · FIFred Hutch Cancer Center · USMedisch Centrum Leeuwarden · NLTampere University Hospital · FIUniversity of Rochester Medical Center · US

Funding

The Pathogenesis of Facioscapulohumeral Muscular DystrophyP01NS069539 · NINDS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2010 to 2019
$12.3M
NINDS NIH HHS P01 NS069539
6 · The paper itself

Abstract

Facioscapulohumeral dystrophy (FSHD) is associated with somatic chromatin relaxation of the D4Z4 repeat array and derepression of the D4Z4-encoded DUX4 retrogene coding for a germline transcription factor. Somatic DUX4 derepression is caused either by a 1-10 unit repeat-array contraction (FSHD1) or by mutations in SMCHD1, which encodes a chromatin repressor that binds to D4Z4 (FSHD2). Here, we show that heterozygous mutations in DNA methyltransferase 3B (DNMT3B) are a likely cause of D4Z4 derepression associated with low levels of DUX4 expression from the D4Z4 repeat and increased penetrance of FSHD. Recessive mutations in DNMT3B were previously shown to cause immunodeficiency, centromeric instability, and facial anomalies (ICF) syndrome. This study suggests that transcription of DUX4 in somatic cells is modified by variations in its epigenetic state and provides a basis for understanding the reduced penetrance of FSHD within families.

Indexed as

PenetranceAdolescentAdultAgedAmino Acid SequenceChildChild, PreschoolChromatinDNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA Methyltransferase 3BEpigenetic RepressionFemaleHumansInfantMaleChromatinDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3B

Identifiers

PMID27153398
PMCPMC4863565
OpenAlexW2345624975

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.