Evidence map›Paper›PMID 27153090›Full record

ArticleToxins2016

Pathway for Biodegrading Nodularin (NOD) by Sphingopyxis sp. USTB-05.

Nan Feng, Fan Yang, Hai Yan, Chunhua Yin, Xiaolu Liu, Haiyang Zhang, Qianqian Xu, Le Lv, Huasheng Wang

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Genomic Analysis ofToxins · 2022
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Nan FengSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. ustbnanfeng@163.com.
Fan YangSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. ustbyangfan@163.com.
Hai YanSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. haiyan@ustb.edu.cn.
Chunhua YinSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. chyin@ustb.edu.cn.
Xiaolu LiuSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. xiaoluliu@ustb.edu.cn.
Haiyang ZhangSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. zhanghy@ustb.edu.cn.
Qianqian XuSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. qianqianxu@ustb.edu.cn.
Le LvSchool of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing 100083, China. lvle@ustb.edu.cn.
Huasheng WangSchool of Architectural and Surveying & Mapping Engineering, Jiangxi University of Science and Technology, Ganzhou 341000, China. wanghuasheng2005@126.com.
University of Science and Technology Beijing · CNJiangxi University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nodularin (NOD) is greatly produced by Nodularia spumigena and released into the environment when toxic cyanobacterial blooms happened in natural water body, which is seriously harmful to human and animals. The promising bacterial strain of Sphingopyxis sp. USTB-05 was found to have an ability in biodegrading NOD. Initially, 11.6 mg/L of NOD could be completely eliminated within 72 h by whole cells of USTB-05, and within 36 h by its crude enzymes (CEs) of 570 mg/L, respectively. During the enzymatic biodegradation process of NOD, two products were observed on the profiles of HPLC. Based on the analysis of m/z ratios of NOD and its two products on a rapid-resolution liquid chromatogram-mass spectrum (RRLC-MS), we suggested that at least two enzymes of USTB-05 participated in biodegrading NOD. The first enzyme hydrolyzed Arg-Adda peptide bond of cyclic NOD and converted it to linear NOD as the first product. The second enzyme was found to cut off the target peptide bond between Adda and Glu of linearized NOD, and Adda was produced as a second and dead-end product. This finding is very important in both basic research and the application of USTB-05 on the removal of NOD from a water environment.

Indexed as

Biodegradation, EnvironmentalChromatography, High Pressure LiquidMass SpectrometryPeptides, CyclicSphingomonadaceaenodularinPeptides, Cyclicbiodegradation pathwaycrude enzymes (CEs)nodularin (NOD)Sphingopyxis sp. USTB-05

Identifiers

PMID27153090
PMCPMC4885035
OpenAlexW2346806113

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.