Evidence map›Paper›PMID 27152022›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Self-regulating genomic island encoding tandem regulators confers chromatic acclimation to marine Synechococcus.

Joseph E Sanfilippo, Adam A Nguyen, Jonathan A Karty, Animesh Shukla, Wendy M Schluchter, Laurence Garczarek, Frédéric Partensky, David M Kehoe

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 49 citations in OpenAlex.

  1. Nocturnal hydration prepares desert cyanobacteria for dawn-light harvesting by inducing phycoerythrin synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Competition for light color between marineApplied and environmental microbiology · 2025
    Article
  3. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
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  17. Molecular bases of an alternative dual-enzyme system for light color acclimation of marineProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Article
  19. Article
  20. Interplay between differentially expressed enzymes contributes to light color acclimation in marineProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Joseph E SanfilippoDepartment of Biology, Indiana University, Bloomington, IN 47405;
Adam A NguyenDepartment of Biological Sciences, University of New Orleans, New Orleans, LA 70148; Department of Chemistry, University of New Orleans, New Orleans, LA 70148;
Jonathan A KartyMass Spectrometry Facility, Department of Chemistry, Indiana University, Bloomington, IN 47405;
Animesh ShuklaDepartment of Biology, Indiana University, Bloomington, IN 47405;
Wendy M SchluchterDepartment of Biological Sciences, University of New Orleans, New Orleans, LA 70148; Department of Chemistry, University of New Orleans, New Orleans, LA 70148;
Laurence GarczarekSorbonne Universités, Université Pierre et Marie Curie University Paris 06, CNRS, UMR 7144, Station Biologique, Plankton Group, 29688 Roscoff, France;
Frédéric PartenskySorbonne Universités, Université Pierre et Marie Curie University Paris 06, CNRS, UMR 7144, Station Biologique, Plankton Group, 29688 Roscoff, France;
David M KehoeDepartment of Biology, Indiana University, Bloomington, IN 47405; Indiana Molecular Biology Institute, Indiana University, Bloomington, IN 47405 dkehoe@indiana.edu.
Indiana University Bloomington · USCentre National de la Recherche Scientifique · FRUniversity of New Orleans · US

Funding

TRAINING IN GENETICST32GM007757 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KUMAR, JUSTIN P · 1985 to 2014
$8.1M
NIGMS NIH HHS T32 GM007757
6 · The paper itself

Abstract

The evolutionary success of marine Synechococcus, the second-most abundant phototrophic group in the marine environment, is partly attributable to this group's ability to use the entire visible spectrum of light for photosynthesis. This group possesses a remarkable diversity of light-harvesting pigments, and most of the group's members are orange and pink because of their use of phycourobilin and phycoerythrobilin chromophores, which are attached to antennae proteins called phycoerythrins. Many strains can alter phycoerythrin chromophore ratios to optimize photon capture in changing blue-green environments using type IV chromatic acclimation (CA4). Although CA4 is common in most marine Synechococcus lineages, the regulation of this process remains unexplored. Here, we show that a widely distributed genomic island encoding tandem master regulators named FciA (for type four chromatic acclimation island) and FciB plays a central role in controlling CA4. FciA and FciB have diametric effects on CA4. Interruption of fciA causes a constitutive green light phenotype, and interruption of fciB causes a constitutive blue light phenotype. These proteins regulate all of the molecular responses occurring during CA4, and the proteins' activity is apparently regulated posttranscriptionally, although their cellular ratio appears to be critical for establishing the set point for the blue-green switch in ecologically relevant light environments. Surprisingly, FciA and FciB coregulate only three genes within the Synechococcus genome, all located within the same genomic island as fciA and fciB These findings, along with the widespread distribution of strains possessing this island, suggest that horizontal transfer of a small, self-regulating DNA region has conferred CA4 capability to marine Synechococcus throughout many oceanic areas.

Indexed as

Aquatic OrganismsBacterial ProteinsGenomic IslandsPhycoerythrinSynechococcusAcclimatizationBacterial ProteinsPhycoerythrinhorizontal gene transferlight regulationmarine biologymarine cyanobacteriaphycobilisome

Identifiers

PMID27152022
PMCPMC4889380
OpenAlexW2345862663

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.