Evidence map›Paper›PMID 27150822›Full record

ArticleScientific reports2016

Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection.

Ze-Yuan Li, Jing Xia, Zheng Chen, Yang Yu, Quan-Feng Li, Yu-Chan Zhang, Jin-Ping Zhang, Cong-Ying Wang, Xiao-Yuan Zhu, Weixiong Zhang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
11.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Deciphering the role of microRNAs duringPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  8. Article
  9. Article
  10. circRNAs Are Involved in the Rice-Plant physiology · 2020
    Article
  11. Article
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  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. 4-Coumarate-CoA Ligase-Like GeneFrontiers in plant science · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Ze-Yuan LiState Key Laboratory for Biocontrol, School of Life Science, Sun Yat-Sen University, Guangzhou 510275, P. R. China.
Jing XiaInstitute for Systems Biology, Jianghan University, Wuhan, Hubei 430056, China.
Zheng ChenInstitute for Systems Biology, Jianghan University, Wuhan, Hubei 430056, China.
Yang YuState Key Laboratory for Biocontrol, School of Life Science, Sun Yat-Sen University, Guangzhou 510275, P. R. China.
Quan-Feng LiState Key Laboratory for Biocontrol, School of Life Science, Sun Yat-Sen University, Guangzhou 510275, P. R. China.
Yu-Chan ZhangState Key Laboratory for Biocontrol, School of Life Science, Sun Yat-Sen University, Guangzhou 510275, P. R. China.
Jin-Ping ZhangState Key Laboratory for Biocontrol, School of Life Science, Sun Yat-Sen University, Guangzhou 510275, P. R. China.
Cong-Ying WangPlant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
Xiao-Yuan ZhuPlant Protection Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
Weixiong ZhangInstitute for Systems Biology, Jianghan University, Wuhan, Hubei 430056, China.
Yue-Qin ChenState Key Laboratory for Biocontrol, School of Life Science, Sun Yat-Sen University, Guangzhou 510275, P. R. China.
Sun Yat-sen University · CNGuangdong Academy of Agricultural Sciences · CNJianghan University · CNWashington University in St. Louis · US

Funding

A NOVEL CO-EXPRESSION NETWORK APPROACH THAT IS ROBUST TO GENETIC HETEROGENEITY ANR01GM100364 · NIGMS · WASHINGTON UNIVERSITY · PI ZHANG, WEIXIONG · 2012 to 2015
$1.2M
NIGMS NIH HHS R01 GM100364
6 · The paper itself

Abstract

Rice blast is a recurrent fungal disease, and resistance to fungal infection is a complex trait. Therefore, a comprehensive examination of rice transcriptome and its variation during fungal infection is necessary to understand the complex gene regulatory networks. In this study, adopting Next-Generation Sequencing we profiled the transcriptomes and microRNAomes of rice varieties, one susceptible and the other resistant to M. oryzae, at multiple time points during the fungal infection. Our results revealed a substantial variation in the plant transcriptome and microRNAome as well as change to rice innate immunity during fungal infection. A number of putative R gene candidates were identified from a perturbed rice transcriptome analysis. The expression of genes and non-coding RNA molecules changed in both fungal resistant and susceptible plants during M. oryzae invasion discovered distinct pathways triggered in the susceptible and resistant plants. In addition, a number of fungus genes in the susceptible and resistant plants were constantly expressed at different time points, suggesting that they were likely to be the potential AVR genes. Our results revealed large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection, which would help to develop more robust blast-resistant rice plants.

Indexed as

Gene Expression Regulation, PlantImmunity, InnateGene Expression ProfilingHigh-Throughput Nucleotide SequencingMicroRNAsOryzaPlant DiseasesMicroRNAs

Identifiers

PMID27150822
PMCPMC4858701
OpenAlexW2345614835

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.