Evidence map›Paper›PMID 27150116›Full record

ArticleScientific reports2016

PCNA is involved in the EndoQ-mediated DNA repair process in Thermococcales.

Miyako Shiraishi, Sonoko Ishino, Kotaro Yoshida, Takeshi Yamagami, Isaac Cann, Yoshizumi Ishino

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Review
  4. Open biology · 2020
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Miyako ShiraishiGraduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka, Japan.
Sonoko IshinoGraduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka, Japan.
Kotaro YoshidaGraduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka, Japan.
Takeshi YamagamiGraduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka, Japan.
Isaac CannInstitute for Universal Biology and University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Yoshizumi IshinoGraduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka, Japan.
Kyushu University · JPUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To maintain genome integrity for transfer to their offspring, and to maintain order in cellular processes, all living organisms have DNA repair systems. Besides the well-conserved DNA repair machineries, organisms thriving in extreme environments are expected to have developed efficient repair systems. We recently discovered a novel endonuclease, which cleaves the 5' side of deoxyinosine, from the hyperthermophilic archaeon, Pyrococcus furiosus. The novel endonuclease, designated as Endonulcease Q (EndoQ), recognizes uracil, abasic site and xanthine, as well as hypoxanthine, and cuts the phosphodiester bond at their 5' sides. To understand the functional process involving EndoQ, we searched for interacting partners of EndoQ and identified Proliferating Cell Nuclear Angigen (PCNA). The EndoQ activity was clearly enhanced by addition of PCNA in vitro. The physical interaction between the two proteins through a PIP-motif of EndoQ and the toroidal structure of PCNA are critical for the stimulation of the endonuclease activity. These findings provide us a clue to elucidate a unique DNA repair system in Archaea.

Indexed as

DNA RepairEndodeoxyribonucleasesProliferating Cell Nuclear AntigenProtein Interaction MappingPyrococcus furiosusEndodeoxyribonucleasesProliferating Cell Nuclear Antigen

Identifiers

PMID27150116
PMCPMC4858679
OpenAlexW2345940111

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.