Evidence map›Paper›PMID 27149259›Full record

ArticlePLoS genetics2016

UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts.

Jianqiang Bao, Kristoffer Vitting-Seerup, Johannes Waage, Chong Tang, Ying Ge, Bo T Porse, Wei Yan

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Review
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  7. Review
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  9. Article
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  11. TheBiomolecules · 2025
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  12. Review
  13. Unveiling the dynamics and therapeutic potential of mInternational journal of biological sciences · 2025
    Review
  14. Review
  15. Gene regulation during meiosis.Trends in genetics : TIG · 2024
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. ThroughoutFrontiers in endocrinology · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jianqiang BaoDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Kristoffer Vitting-SeerupBiotech Research and Innovation Center (BRIC), University of Copenhagen, Copenhagen, Denmark.
Johannes WaageBiotech Research and Innovation Center (BRIC), University of Copenhagen, Copenhagen, Denmark.
Chong TangDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Ying GeBiotech Research and Innovation Center (BRIC), University of Copenhagen, Copenhagen, Denmark.
Bo T PorseBiotech Research and Innovation Center (BRIC), University of Copenhagen, Copenhagen, Denmark.
Wei YanDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
University of Nevada, Reno · USRigshospitalet · DKUniversity of Copenhagen · DK

Funding

Single Cell Molecular ExpressionP30GM110767 · NIGMS · UNIVERSITY OF NEVADA RENO · PI SANDERS, KENTON M · 2014 to 2018
$5.4M
Regulation of Spermatogenesis by X-linked miRNAsR01HD060858 · NICHD · UNIVERSITY OF NEVADA RENO · PI MCCARREY, JOHN R, YAN, WEI · 2010 to 2014
$2.0M
Are sperm-borne small RNAs important?R21HD071736 · NICHD · UNIVERSITY OF NEVADA RENO · PI YAN, WEI · 2012 to 2013
$380k
Regulation of Leydig cell function by small noncoding RNAsR03HD074573 · NICHD · UNIVERSITY OF NEVADA RENO · PI YAN, WEI · 2013 to 2014
$139k
NICHD NIH HHS R01 HD060858NICHD NIH HHS R03 HD074573NICHD NIH HHS R21 HD071736NIGMS NIH HHS P30 GM110767
6 · The paper itself

Abstract

During transcription, most eukaryotic genes generate multiple alternative cleavage and polyadenylation (APA) sites, leading to the production of transcript isoforms with variable lengths in the 3' untranslated region (3'UTR). In contrast to somatic cells, male germ cells, especially pachytene spermatocytes and round spermatids, express a distinct reservoir of mRNAs with shorter 3'UTRs that are essential for spermatogenesis and male fertility. However, the mechanisms underlying the enrichment of shorter 3'UTR transcripts in the developing male germ cells remain unknown. Here, we report that UPF2-mediated nonsense-mediated mRNA decay (NMD) plays an essential role in male germ cells by eliminating ubiquitous genes-derived, longer 3'UTR transcripts, and that this role is independent of its canonical role in degrading "premature termination codon" (PTC)-containing transcripts in somatic cell lineages. This report provides physiological evidence supporting a noncanonical role of the NMD pathway in achieving global 3'UTR shortening in the male germ cells during spermatogenesis.

Indexed as

3' Untranslated RegionsAnimalsCarrier ProteinsCell LineageGerm CellsMaleMiceNonsense Mediated mRNA DecayPolyadenylationRNA-Binding ProteinsRNA, MessengerSignal TransductionSpermatidsSpermatocytesSpermatogenesisTranscription, Genetic3' Untranslated RegionsCarrier ProteinsRNA-Binding ProteinsRNA, MessengerUpf2 protein, mouse

Identifiers

PMID27149259
PMCPMC4858225
OpenAlexW2345688099

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.