ArticleCold Spring Harbor molecular case studies2015
Capturing phenotypes for precision medicine.
Article in Cold Spring Harbor molecular case studies, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07427927 (Data-driven Clustering in Hemorrhoid Surgery), which is not on this map. Cited by 24 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Data-driven Clustering in Hemorrhoid Surgery: Retrospective Monocentric Study for the Identification of Clinical Phenotypes
Who cites it
24 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Systematic Review: Monoclonal Antibody-Induced Subacute Cutaneous Lupus Erythematosus.Drugs in R&D · 2020Pooled it
- Reframing ontology fact acquisition during large language model fine-tuning as a time-to-event process.Frontiers in artificial intelligence · 2026Article
- Development of self-phenotyping tools to empower patients and improve diagnostics.EBioMedicine · 2025Article
- Hybrid natural language processing tool for semantic annotation of medical texts in Spanish.BMC bioinformatics · 2025Article
- Integrating deep phenotyping with genetic analysis: a comprehensive workflow for diagnosis and management of rare bone diseases.Orphanet journal of rare diseases · 2024Article
- Creating High-Quality Synthetic Health Data: Framework for Model Development and Validation.JMIR formative research · 2024Article
- Dissecting Schizotypy and Its Association With Cognition and Polygenic Risk for Schizophrenia in a Nonclinical Sample.Schizophrenia bulletin · 2023Article
- Early caregiving adversity differentially shapes behavioral sensitivity to reward and risk during decision-making.Journal of experimental psychology. General · 2022Article
- Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research.Journal of biomedical semantics · 2022Article
- PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology.Journal of biomedical informatics · 2022Article
- Artificial Intelligence Pipeline to Bridge the Gap between Bench Researchers and Clinical Researchers in Precision Medicine.Med one · 2020Article
- Validity of the cold pressor test and pain sensitivity questionnaire via online self-administration.PloS one · 2020Article
- Deep Phenotyping of Parkinson's Disease.Journal of Parkinson's disease · 2020Review
- Data-driven method to enhance craniofacial and oral phenotype vocabularies.Journal of the American Dental Association (1939) · 2019Article
- Exploring the dark genome: implications for precision medicine.Mammalian genome : official journal of the International Mammalian Genome Society · 2019Review
- Feasibility study of a point-of-care positron emission tomography system with interactive imaging capability.Medical physics · 2019Article
- Merging heterogeneous clinical data to enable knowledge discovery.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2019Article
- Enabling Global Clinical Collaborations on Identifiable Patient Data: The Minerva Initiative.Frontiers in genetics · 2019Article
- Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2018Article
- The anatomy of phenotype ontologies: principles, properties and applications.Briefings in bioinformatics · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Deep phenotyping followed by integrated computational analysis of genotype and phenotype is becoming ever more important for many areas of genomic diagnostics and translational research. The overwhelming majority of clinical descriptions in the medical literature are available only as natural language text, meaning that searching, analysis, and integration of medically relevant information in databases such as PubMed is challenging. The new journal Cold Spring Harbor Molecular Case Studies will require authors to select Human Phenotype Ontology terms for research papers that will be displayed alongside the manuscript, thereby providing a foundation for ontology-based indexing and searching of articles that contain descriptions of phenotypic abnormalities-an important step toward improving the ability of researchers and clinicians to get biomedical information that is critical for clinical care or translational research.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.