ArticleFrontiers in plant science2016
Population Genomic Analysis Reveals Differential Evolutionary Histories and Patterns of Diversity across Subgenomes and Subpopulations of Brassica napus L.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
18 citing papers in PubMed.
- Chromosome-level genome assembly of Siberian kale (Brassica napus subsp. pabularia).Scientific data · 2026Article
- AlloSHP: deconvoluting single homeologous polymorphism for phylogenetic analysis of allopolyploids.Plant methods · 2025Article
- Dissection of quantitative trait nucleotides and candidate genes associated with agronomic and yield-related traits under drought stress in rapeseed varieties: integration of genome-wide association study and transcriptomic analysis.Frontiers in plant science · 2024Article
- Linkage disequilibrium and population structure in a core collection of Brassica napus (L.).PloS one · 2022Article
- Molecular genetic diversity and population structure analyses of rutabaga accessions from Nordic countries as revealed by single nucleotide polymorphism markers.BMC genomics · 2021Article
- Genomics Armed With Diversity Leads the Way inFrontiers in genetics · 2021Review
- Exploiting High-Throughput Indoor Phenotyping to Characterize the Founders of a StructuredFrontiers in plant science · 2021Article
- Diversity Patterns of Bermuda Grass along Latitudinal Gradients at Different Temperatures in Southeastern China.Plants (Basel, Switzerland) · 2020Article
- Article
- Narrow genetic base shapes population structure and linkage disequilibrium in an industrial oilseed crop, Brassica carinata A. Braun.Scientific reports · 2020Article
- Weak genetic structure despite strong genomic signal in lesser sandeel in the North Sea.Evolutionary applications · 2020Article
- Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity inFrontiers in plant science · 2020Article
- Chromosome-Scale Assembly of Winter Oilseed RapeFrontiers in plant science · 2020Article
- Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus.Nature communications · 2019Article
- Assessment of low-coverage nanopore long read sequencing for SNP genotyping in doubled haploid canola (Brassica napus L.).Scientific reports · 2019Article
- Diversity and Genome Analysis of Australian and Global OilseedFrontiers in plant science · 2018Article
- Clubroot resistance QTL are modulated by nitrogen input in Brassica napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Genome-Wide SNP Markers Based on SLAF-Seq Uncover Breeding Traces in Rapeseed (Frontiers in plant science · 2017Article
Corrections and comments
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The allotetraploid species Brassica napus L. is a global crop of major economic importance, providing canola oil (seed) and vegetables for human consumption and fodder and meal for livestock feed. Characterizing the genetic diversity present in the extant germplasm pool of B. napus is fundamental to better conserve, manage and utilize the genetic resources of this species. We used sequence-based genotyping to identify and genotype 30,881 SNPs in a diversity panel of 782 B. napus accessions, representing samples of winter and spring growth habits originating from 33 countries across Europe, Asia, and America. We detected strong population structure broadly concordant with growth habit and geography, and identified three major genetic groups: spring (SP), winter Europe (WE), and winter Asia (WA). Subpopulation-specific polymorphism patterns suggest enriched genetic diversity within the WA group and a smaller effective breeding population for the SP group compared to WE. Interestingly, the two subgenomes of B. napus appear to have different geographic origins, with phylogenetic analysis placing WE and WA as basal clades for the other subpopulations in the C and A subgenomes, respectively. Finally, we identified 16 genomic regions where the patterns of diversity differed markedly from the genome-wide average, several of which are suggestive of genomic inversions. The results obtained in this study constitute a valuable resource for worldwide breeding efforts and the genetic dissection and prediction of complex B. napus traits.
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