Evidence map›Paper›PMID 27148182›Full record

ArticleFrontiers in microbiology2016

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization.

Amber N Bible, Sarah J Fletcher, Dale A Pelletier, Christopher W Schadt, Sara S Jawdy, David J Weston, Nancy L Engle, Timothy Tschaplinski, Rachel Masyuko, Sneha Polisetti and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Genome ofMicrobiology resource announcements · 2024
    Article
  7. Article
  8. Comparative genomics of a novelMicrobial genomics · 2024
    Article
  9. Article
  10. Microstructural and Rheological Transitions in Bacterial Biofilms.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  11. Complete Genome Sequence ofMicroorganisms · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Amber N BibleBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Sarah J FletcherBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Dale A PelletierBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Christopher W SchadtBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Sara S JawdyBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
David J WestonBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Nancy L EngleBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Timothy TschaplinskiBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Rachel MasyukoDepartment of Chemical and Biomolecular Engineering, University of Notre Dame Notre Dame, IN, USA.
Sneha PolisettiDepartment of Chemical and Biomolecular Engineering, University of Notre Dame Notre Dame, IN, USA.
Paul W BohnDepartment of Chemical and Biomolecular Engineering, University of Notre Dame Notre Dame, IN, USA.
Teresa A CoutinhoDepartment of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria Pretoria, South Africa.
Mitchel J DoktyczBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Jennifer L Morrell-FalveyBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Oak Ridge National Laboratory · USUniversity of Notre Dame · USUniversity of Pretoria · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The complex interactions between plants and their microbiome can have a profound effect on the health and productivity of the plant host. A better understanding of the microbial mechanisms that promote plant health and stress tolerance will enable strategies for improving the productivity of economically important plants. Pantoea sp. YR343 is a motile, rod-shaped bacterium isolated from the roots of Populus deltoides that possesses the ability to solubilize phosphate and produce the phytohormone indole-3-acetic acid (IAA). Pantoea sp. YR343 readily colonizes plant roots and does not appear to be pathogenic when applied to the leaves or roots of selected plant hosts. To better understand the molecular mechanisms involved in plant association and rhizosphere survival by Pantoea sp. YR343, we constructed a mutant in which the crtB gene encoding phytoene synthase was deleted. Phytoene synthase is responsible for converting geranylgeranyl pyrophosphate to phytoene, an important precursor to the production of carotenoids. As predicted, the ΔcrtB mutant is defective in carotenoid production, and shows increased sensitivity to oxidative stress. Moreover, we find that the ΔcrtB mutant is impaired in biofilm formation and production of IAA. Finally we demonstrate that the ΔcrtB mutant shows reduced colonization of plant roots. Taken together, these data suggest that carotenoids are important for plant association and/or rhizosphere survival in Pantoea sp. YR343.

Indexed as

carotenoidscrtBindole-3-acetic acidPantoeapoplarrhizospherezeaxanthin

Identifiers

PMID27148182
PMCPMC4834302
OpenAlexW2340994432

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.