Evidence map›Paper›PMID 27148095›Full record

ArticleFrontiers in psychiatry2016

Functional Implications of the CLOCK 3111T/C Single-Nucleotide Polymorphism.

Angela R Ozburn, Kush Purohit, Puja K Parekh, Gabrielle N Kaplan, Edgardo Falcon, Shibani Mukherjee, Hannah M Cates, Colleen A McClung

Open access · goldAbstract read
In one paragraph

Article in Frontiers in psychiatry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. [Recent research on gene polymorphisms related to caffeine therapy in preterm infants with apnea of prematurity].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2022
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Pathophysiology : the official journal of the International Society for Pathophysiology · 2020
    Article
  16. Impact of adult attention deficit hyperactivity disorder and medication status on sleep/wake behavior and molecular circadian rhythms.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2019
    Article
  17. Genes · 2019
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Angela R OzburnDepartment of Psychiatry and Translational Neuroscience Program, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA; Portland Alcohol Research Center, VA Medical Center, Portland, OR, USA.
Kush PurohitDepartment of Psychiatry and Translational Neuroscience Program, University of Pittsburgh School of Medicine , Pittsburgh, PA , USA.
Puja K ParekhDepartment of Psychiatry and Translational Neuroscience Program, University of Pittsburgh School of Medicine , Pittsburgh, PA , USA.
Gabrielle N KaplanDepartment of Psychiatry and Translational Neuroscience Program, University of Pittsburgh School of Medicine , Pittsburgh, PA , USA.
Edgardo FalconDepartment of Pharmacology, University of Pennsylvania , Philadelphia, PA , USA.
Shibani MukherjeeDepartment of Psychiatry, University of Texas Southwestern Medical Center , Dallas, TX , USA.
Hannah M CatesDepartment of Psychiatry, University of Texas Southwestern Medical Center, Dallas, TX, USA; Fishberg Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Colleen A McClungDepartment of Psychiatry and Translational Neuroscience Program, University of Pittsburgh School of Medicine , Pittsburgh, PA , USA.
University of Pittsburgh · USIcahn School of Medicine at Mount Sinai · USOregon Health & Science University · USThe University of Texas Southwestern Medical Center · USUniversity of Pennsylvania · US

Funding

Basic Science Training Program in Drug Abuse ResearchT32DA007290 · NIDA · YALE UNIVERSITY · PI SELF, DAVID W · 1992 to 2017
$6.7M
Role of The Circadian Clock in the Development and Treatment of Mood DisordersR01MH082876 · NIMH · UT SOUTHWESTERN MEDICAL CENTER · PI MCCLUNG, COLLEEN A · 2009 to 2013
$1.9M
Addiction-like behavior in models of mood disorders: role of CLOCK and NPAS2R01DA023988 · NIDA · UT SOUTHWESTERN MEDICAL CENTER · PI MCCLUNG, COLLEEN A · 2009 to 2013
$1.9M
The Role of CLOCK in Ethanol-Related BehaviorsF32AA020452 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI OZBURN, ANGELA RENEE · 2011 to 2012
$105k
Circadian genes and their role in drug addictionF31DA028085 · NIDA · UT SOUTHWESTERN MEDICAL CENTER · PI FALCON, EDGARDO · 2010 to 2011
$52k
Pharmacogenetic manipulation of brain regions to reduce alcohol binge drinkingIK2BX002488 · VA · PORTLAND VA MEDICAL CENTER · PI OZBURN, ANGELA RENEE · 2015 to 2020
–
BLRD VA IK2 BX002488NIAAA NIH HHS F32 AA020452NIDA NIH HHS F31 DA028085NIDA NIH HHS R01 DA023988NIDA NIH HHS T32 DA007290NIMH NIH HHS R01 MH082876
6 · The paper itself

Abstract

Circadian rhythm disruptions are prominently associated with bipolar disorder (BD). Circadian rhythms are regulated by the molecular clock, a family of proteins that function together in a transcriptional-translational feedback loop. The CLOCK protein is a key transcription factor of this feedback loop, and previous studies have found that manipulations of the Clock gene are sufficient to produce manic-like behavior in mice (1). The CLOCK 3111T/C single-nucleotide polymorphism (SNP; rs1801260) is a genetic variation of the human CLOCK gene that is significantly associated with increased frequency of manic episodes in BD patients (2). The 3111T/C SNP is located in the 3'-untranslated region of the CLOCK gene. In this study, we sought to examine the functional implications of the human CLOCK 3111T/C SNP by transfecting a mammalian cell line (mouse embryonic fibroblasts isolated from Clock(-/-) knockout mice) with pcDNA plasmids containing the human CLOCK gene with either the T or C SNP at position 3111. We then measured circadian gene expression over a 24-h time period. We found that the CLOCK3111C SNP resulted in higher mRNA levels than the CLOCK 3111T SNP. Furthermore, we found that Per2, a transcriptional target of CLOCK, was also more highly expressed with CLOCK 3111C expression, indicating that the 3'-UTR SNP affects the expression, function, and stability of CLOCK mRNA.

Indexed as

bipolar disordercell culturecircadianclockgene expressionsingle-nucleotide polymorphism

Identifiers

PMID27148095
PMCPMC4838618
OpenAlexW2342236172

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.