Evidence map›Paper›PMID 27146487›Full record

ArticleScientific reports2016

Membrane-association of mRNA decapping factors is independent of stress in budding yeast.

Susanne Huch, Jessie Gommlich, Mridula Muppavarapu, Carla Beckham, Tracy Nissan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Susanne HuchDepartment of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden.
Jessie GommlichDepartment of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden.
Mridula MuppavarapuDepartment of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden.
Carla BeckhamDepartment of Urology, University of Rochester, Rochester, NY 14642, USA.
Tracy NissanDepartment of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden.
Umeå University · SEUniversity of Rochester · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent evidence has suggested that the degradation of mRNA occurs on translating ribosomes or alternatively within RNA granules called P bodies, which are aggregates whose core constituents are mRNA decay proteins and RNA. In this study, we examined the mRNA decapping proteins, Dcp1, Dcp2, and Dhh1, using subcellular fractionation. We found that decapping factors co-sediment in the polysome fraction of a sucrose gradient and do not alter their behaviour with stress, inhibition of translation or inhibition of the P body formation. Importantly, their localisation to the polysome fraction is independent of the RNA, suggesting that these factors may be constitutively localised to the polysome. Conversely, polysomal and post-polysomal sedimentation of the decapping proteins was abolished with the addition of a detergent, which shifts the factors to the non-translating RNP fraction and is consistent with membrane association. Using a membrane flotation assay, we observed the mRNA decapping factors in the lower density fractions at the buoyant density of membrane-associated proteins. These observations provide further evidence that mRNA decapping factors interact with subcellular membranes, and we suggest a model in which the mRNA decapping factors interact with membranes to facilitate regulation of mRNA degradation.

Indexed as

Gene Expression Regulation, FungalCell CycleCell FractionationCell MembraneCentrifugation, Density GradientDEAD-box RNA HelicasesDetergentsEndoribonucleasesGlucoseOsmotic PressurePolyribosomesProtein AggregatesProtein BiosynthesisRNA Cap-Binding ProteinsRNA, MessengerRNA StabilityDCP1 protein, S cerevisiaeDCP2 protein, S cerevisiaeDEAD-box RNA HelicasesDetergentsDHH1 protein, S cerevisiaeEndoribonucleasesGlucoseProtein AggregatesRNA Cap-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsSucrose

Identifiers

PMID27146487
PMCPMC4857118
OpenAlexW2346329777

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.