Evidence map›Paper›PMID 27146152›Full record

ArticleOrphanet journal of rare diseases2016

Utility of whole exome sequencing for the early diagnosis of pediatric-onset cerebellar atrophy associated with developmental delay in an inbred population.

Hisham Megahed, Michaël Nicouleau, Giulia Barcia, Daniel Medina-Cano, Karine Siquier-Pernet, Christine Bole-Feysot, Mélanie Parisot, Cécile Masson, Patrick Nitschké, Marlène Rio and 6 more

Open access · goldAbstract read
In one paragraph

Article in Orphanet journal of rare diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Molybdenum Cofactor Deficiency in Humans.Molecules (Basel, Switzerland) · 2022
    Review
  10. Article
  11. Article
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  13. Article
  14. Article
  15. Article
  16. Article
  17. A RareFrontiers in genetics · 2020
    Article
  18. Article
  19. Going Too Far Is the Same as Falling ShortFrontiers in cellular neuroscience · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 2 countries.

Hisham MegahedClinical Genetics Department, Human Genetics and Genome Research Division, National Research Center, Cairo, 12311, Egypt.
Michaël NicouleauINSERM UMR 1163, Laboratory of Molecular and Pathophysiological Bases of Cognitive Disorders, Paris, France.
Giulia BarciaINSERM UMR 1163, Laboratory of Molecular and Pathophysiological Bases of Cognitive Disorders, Paris, France.
Daniel Medina-CanoINSERM UMR 1163, Laboratory of Molecular and Pathophysiological Bases of Cognitive Disorders, Paris, France.
Karine Siquier-PernetINSERM UMR 1163, Laboratory of Molecular and Pathophysiological Bases of Cognitive Disorders, Paris, France.
Christine Bole-FeysotGenomic Platform, INSERM UMR 1163, Paris Descartes - Sorbonne Paris Citée University, Imagine Institute, 75015, Paris, France.
Mélanie ParisotGenomic Platform, INSERM UMR 1163, Paris Descartes - Sorbonne Paris Citée University, Imagine Institute, 75015, Paris, France.
Cécile MassonBioinformatic Platform, INSERM UMR 1163, Paris Descartes - Sorbonne Paris Citée University, Imagine Institute, 75015, Paris, France.
Patrick NitschkéBioinformatic Platform, INSERM UMR 1163, Paris Descartes - Sorbonne Paris Citée University, Imagine Institute, 75015, Paris, France.
Marlène RioParis Descartes - Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Nadia Bahi-BuissonParis Descartes - Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Isabelle DesguerreParis Descartes - Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Arnold MunnichParis Descartes - Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Nathalie BoddaertParis Descartes - Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Laurence ColleauxINSERM UMR 1163, Laboratory of Molecular and Pathophysiological Bases of Cognitive Disorders, Paris, France.
Vincent CantagrelINSERM UMR 1163, Laboratory of Molecular and Pathophysiological Bases of Cognitive Disorders, Paris, France. vincent.cantagrel@inserm.fr.
Délégation Paris 5 · FRInstitut des Maladies Génétiques Imagine · FRUniversité Paris Cité · FRInserm · FRSorbonne Paris Cité · FRAssistance Publique – Hôpitaux de Paris · FRInstitut Necker Enfants Malades · FRNational Water Research Center · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCerebellar atrophy and developmental delay are commonly associated features in large numbers of genetic diseases that frequently also include epilepsy. These defects are highly heterogeneous on both the genetic and clinical levels. Patients with these signs also typically present with non-specific neuroimaging results that can help prioritize further investigation but don't suggest a specific molecular diagnosis.

methodsTo genetically explore a cohort of 18 Egyptian families with undiagnosed cerebellar atrophy identified on MRI, we sequenced probands and some non-affected family members via high-coverage whole exome sequencing (WES; >97 % of the exome covered at least by 30x). Patients were mostly from consanguineous families, either sporadic or multiplex. We analyzed WES data and filtered variants according to dominant and recessive inheritance models.

resultsWe successfully identified disease-causing mutations in half of the families screened (9/18). These mutations are located in seven different genes, PLA2G6 being the gene most frequently mutated (n = 3). We also identified a recurrent de novo mutation in the KIF1A gene and a molybdenum cofactor deficiency caused by the loss of the start codon in the MOCS2A open-reading frame in a mildly affected subject.

conclusionsThis study illustrates the necessity of screening for dominant mutations in WES data from consanguineous families. Our identification of a patient with a mild and improving phenotype carrying a previously characterized severe loss of function mutation also broadens the clinical spectrum associated with molybdenum cofactor deficiency.

Indexed as

AtrophyBrainCerebellar AtaxiaChild, PreschoolDevelopmental DisabilitiesEarly DiagnosisExomeFemaleHumansMagnetic Resonance ImagingMaleMutationPhenotypeSequence Analysis, DNACerebellum atrophyExome sequencingIntellectual disabilityKIF1AMOCS2Molybdenum cofactor deficiency

Identifiers

PMID27146152
PMCPMC4855324
OpenAlexW2345334325

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.