Evidence map›Paper›PMID 27145786›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2016

Dependence of the structure and mechanics of metaphase chromosomes on oxidized cysteines.

Adrienne Eastland, Jessica Hornick, Ryo Kawamura, Dhaval Nanavati, John F Marko

Abstract read
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Adrienne EastlandDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA.
Jessica HornickDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA.
Ryo KawamuraDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA.
Dhaval NanavatiProteomics Core, Chemistry of Life Processes Institute, Northwestern University, Evanston, IL, 60208, USA.
John F MarkoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA. john-marko@northwestern.edu.
Northwestern University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Center for 3D Structure and Physics of the GenomeU54DK107980 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2015 to 2019
$14.9M
Spatio-Temporal Organization of Chromatin and Information Transfer in CancerU54CA193419 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BACKMAN, VADIM · 2015 to 2020
$10.4M
Mentoring For Success: Developing Fundamental Skills For Biomedical ResearchR25GM079300 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MCGEE, RICHARD · 2007 to 2020
$6.6M
Activities of nucleoprotein complexes visualized in single-molecule experimentsR01GM105847 · NIGMS · NORTHWESTERN UNIVERSITY · PI MARKO, JOHN F · 2013 to 2025
$2.5M
NCI NIH HHS P30 CA060553NCI NIH HHS U54 CA193419NIDDK NIH HHS U54 DK107980NIGMS NIH HHS R01 GM105847NIGMS NIH HHS R25 GM079300
6 · The paper itself

Abstract

We have found that reagents that reduce oxidized cysteines lead to destabilization of metaphase chromosome folding, suggesting that chemically linked cysteine residues may play a structural role in mitotic chromosome organization, in accord with classical studies by Dounce et al. (J Theor Biol 42:275-285, 1973) and Sumner (J Cell Sci 70:177-188, 1984a). Human chromosomes isolated into buffer unfold when exposed to dithiothreitol (DTT) or tris(2-carboxyethyl)phosphine (TCEP). In micromanipulation experiments which allow us to examine the mechanics of individual metaphase chromosomes, we have found that the gel-like elastic stiffness of native metaphase chromosomes is dramatically suppressed by DTT and TCEP, even before the chromosomes become appreciably unfolded. We also report protein labeling experiments on human metaphase chromosomes which allow us to tag oxidized and reduction-sensitive cysteine residues. PAGE analysis using fluorescent labels shows a small number of labeled bands. Mass spectrometry analysis of similarly labeled proteins provides a list of candidates for proteins with oxidized cysteines involved in chromosome organization, notably including components of condensin I, cohesin, the nucleosome-interacting proteins RCC1 and RCC2, as well as the RNA/DNA-binding protein NONO/p54NRB.

Indexed as

Adenosine TriphosphatasesAnimalsCell Cycle ProteinsCell LineChromosomal Proteins, Non-HistoneChromosomes, HumanCohesinsCysteineDithiothreitolDNA-Binding ProteinsElectrophoresis, Gel, Two-DimensionalGuanine Nucleotide Exchange FactorsHEK293 CellsHumansKaryotypeMass SpectrometryAdenosine TriphosphatasesCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinscondensin complexesCysteineDithiothreitolDNA-Binding ProteinsGuanine Nucleotide Exchange FactorsMultiprotein ComplexesNONO protein, humanNuclear Matrix-Associated ProteinsNuclear ProteinsOctamer Transcription FactorsPhosphinesRCC1 protein, humanRCC2 protein, humanRNA-Binding Proteinstris(2-carboxyethyl)phosphineChromosome structureCysteineDisulfideMetaphase chromosome

Identifiers

PMID27145786
PMCPMC4970972
OpenAlexW2346819761

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.