Evidence map›Paper›PMID 27143720›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Site-specific genome editing for correction of induced pluripotent stem cells derived from dominant dystrophic epidermolysis bullosa.

Satoru Shinkuma, Zongyou Guo, Angela M Christiano

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 110 citations in OpenAlex.

  1. Review
  2. Review
  3. Nucleic Acid Therapy for the Skin.The Journal of investigative dermatology · 2025
    Review
  4. Enhanced HDR-mediated correction of heterozygousMolecular therapy. Nucleic acids · 2025
    Article
  5. Article
  6. Review
  7. Advanced gene-editing strategy for epidermolysis bullosa simplex.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  8. Review
  9. Review
  10. Review
  11. Stem Cell Therapies for Epidermolysis Bullosa Treatment.Bioengineering (Basel, Switzerland) · 2023
    Review
  12. Challenges of Gene Editing Therapies for Genodermatoses.International journal of molecular sciences · 2023
    Review
  13. Article
  14. Gene Editing and Human iPSCs in Cardiovascular and Metabolic Diseases.Advances in experimental medicine and biology · 2023
    Article
  15. Review
  16. Review
  17. Detection of Novel Biallelic Causative Variants inDiagnostics (Basel, Switzerland) · 2022
    Article
  18. CRISPR-Cas9‒Based Genomic Engineering in Keratinocytes: From Technology to Application.JID innovations : skin science from molecules to population health · 2022
    Review
  19. The Potential of CRISPR-Guided Therapies in the Dermatology Clinic.JID innovations : skin science from molecules to population health · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Satoru ShinkumaDepartment of Dermatology, Columbia University, New York, NY 10027; Department of Dermatology, Hokkaido University Graduate School of Medicine, Sapporo 060-8638, Japan;
Zongyou GuoDepartment of Dermatology, Columbia University, New York, NY 10027;
Angela M ChristianoDepartment of Dermatology, Columbia University, New York, NY 10027; Department of Genetics and Development, Columbia University, New York, NY 10027 amc65@columbia.edu.
Columbia University · US

Funding

Understanding the Biology of Chronic Ulcers: Histological and Molecular Basis...P30AR044535 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BICKERS, DAVID RINSEY · 1997 to 2015
$6.9M
NIAMS NIH HHS P30 AR044535
6 · The paper itself

Abstract

Genome editing with engineered site-specific endonucleases involves nonhomologous end-joining, leading to reading frame disruption. The approach is applicable to dominant negative disorders, which can be treated simply by knocking out the mutant allele, while leaving the normal allele intact. We applied this strategy to dominant dystrophic epidermolysis bullosa (DDEB), which is caused by a dominant negative mutation in the COL7A1 gene encoding type VII collagen (COL7). We performed genome editing with TALENs and CRISPR/Cas9 targeting the mutation, c.8068_8084delinsGA. We then cotransfected Cas9 and guide RNA expression vectors expressed with GFP and DsRed, respectively, into induced pluripotent stem cells (iPSCs) generated from DDEB fibroblasts. After sorting, 90% of the iPSCs were edited, and we selected four gene-edited iPSC lines for further study. These iPSCs were differentiated into keratinocytes and fibroblasts secreting COL7. RT-PCR and Western blot analyses revealed gene-edited COL7 with frameshift mutations degraded at the protein level. In addition, we confirmed that the gene-edited truncated COL7 could neither associate with normal COL7 nor undergo triple helix formation. Our data establish the feasibility of mutation site-specific genome editing in dominant negative disorders.

Indexed as

AdultAnimalsBase SequenceCell DifferentiationCells, CulturedCell Transformation, NeoplasticCollagen Type VIIDNA Mutational AnalysisEpidermolysis Bullosa DystrophicaFibroblastsGene EditingGene ExpressionHumansInduced Pluripotent Stem CellsMaleMice, NudeCOL7A1 protein, humanCollagen Type VIICRISPR/Casdominant negative effectepidermolysis bullosagene editingTALENs

Identifiers

PMID27143720
PMCPMC4878469
OpenAlexW2346563868

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.