Evidence map›Paper›PMID 27143360›Full record

ArticleThe Journal of biological chemistry2016

Tyrosine Residue in the TRPV1 Vanilloid Binding Pocket Regulates Deactivation Kinetics.

Rakesh Kumar, Adina Hazan, Arijit Basu, Nomi Zalcman, Henry Matzner, Avi Priel

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. The psychoactive cannabinoid THC inhibits peripheral nociceptors by targeting NaNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2026
    Article
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  3. Article
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  5. Article
  6. Assessment of Occupational Health Hazards Due to Particulate Matter Originated from Spices.International journal of environmental research and public health · 2019
    Review
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rakesh KumarFrom the Faculty of Medicine, Institute for Drug Research (IDR), School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Adina HazanFrom the Faculty of Medicine, Institute for Drug Research (IDR), School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Arijit BasuFrom the Faculty of Medicine, Institute for Drug Research (IDR), School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Nomi ZalcmanFrom the Faculty of Medicine, Institute for Drug Research (IDR), School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Henry MatznerFrom the Faculty of Medicine, Institute for Drug Research (IDR), School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Avi PrielFrom the Faculty of Medicine, Institute for Drug Research (IDR), School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem 91120, Israel avip@ekmd.huji.ac.il.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vanilloids are pain evoking molecules that serve as ligands of the "heat and capsaicin receptor" TRPV1. Binding of either endogenous or exogenous vanilloids evokes channel and subsequent neuronal activation, leading to pain sensation. Despite its pivotal physiological role, the molecular basis of TRPV1 activation and deactivation is not fully understood. The highly conserved tyrosine in position 511 (Tyr(511)) of the rat TRPV1 (rTRPV1) was the first residue to be identified as a necessary participant in the vanilloid-mediated response. rTRPV1 cryo-EM structures implicated rotation of this residue in the vanilloids bound state. Therefore, we hypothesize that the rTRPV1 Tyr(511) residue entraps vanilloids in their binding site, prolonging channel activity. To test our hypothesis, we generated an array of rTRPV1 mutants, containing the whole spectrum of Tyr(511) substitutions, and tested their response to both exo- and endovanilloids. Our data show that only substitutions of Tyr(511) to aromatic amino acids were able to mimic, albeit partially, the vanilloid-evoked activation pattern of the wt receptor. Although these substitutions reduced the channel sensitivity to vanilloids, a maximal open-channel lifetime could be achieved. Moreover, whereas their current activation rate remains intact, receptors with Tyr(511) substitutions exhibited a faster current deactivation. Our findings therefore suggest that the duration of channel activity evoked by vanilloids is regulated by the interaction between Tyr(511) and the agonist. To conclude, we suggest that Tyr(511)-mediated anchoring of vanilloids in their binding pocket is pivotal for TRPV1 activation and subsequent pain sensation.

Indexed as

Amino Acid SubstitutionAnimalsBinding SitesCell LineHumansKineticsMutation, MissensePainRatsTRPV Cation ChannelsTyrosineTRPV1 protein, humanTrpv1 protein, ratTRPV Cation ChannelsTyrosineelectrophysiologygatingsite-directed mutagenesisstructure-functiontransient receptor potential channels (TRP channels)

Identifiers

PMID27143360
PMCPMC4919467

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.