Evidence map›Paper›PMID 27143358›Full record

ArticleThe Journal of biological chemistry2016

Quantitative Analysis of Dynamic Protein Interactions during Transcription Reveals a Role for Casein Kinase II in Polymerase-associated Factor (PAF) Complex Phosphorylation and Regulation of Histone H2B Monoubiquitylation.

Lynn Glowczewski Bedard, Raghuvar Dronamraju, Jenny L Kerschner, Gerald O Hunter, Elizabeth DeVlieger Axley, Asha K Boyd, Brian D Strahl, Amber L Mosley

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Lynn Glowczewski BedardFrom the Department of Biology, DePauw University, Greencastle, Indiana 46135, the Department of Biochemistry and Molecular Biology and.
Raghuvar Dronamrajuthe Department of Biochemistry and Biophysics.
Jenny L Kerschnerthe Department of Biochemistry and Biophysics, Lineberger Comprehensive Cancer Center, and.
Gerald O Hunterthe Department of Biochemistry and Molecular Biology and.
Elizabeth DeVlieger Axleythe Department of Biochemistry and Molecular Biology and.
Asha K BoydFrom the Department of Biology, DePauw University, Greencastle, Indiana 46135, the Department of Biochemistry and Molecular Biology and.
Brian D Strahlthe Department of Biochemistry and Biophysics, Lineberger Comprehensive Cancer Center, and Curriculum in Genetics and Molecular Biology, University of North Carolina School of Medicine, Chapel Hill, North Carolina 27599.
Amber L Mosleythe Department of Biochemistry and Molecular Biology and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana 46202, and almosley@iu.edu.
Indiana University – Purdue University Indianapolis · USIndiana University School of MedicineUniversity of North Carolina at Chapel Hill · USDePauw University · USUNC Lineberger Comprehensive Cancer Center

Funding

Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
Regulation of RNA Polymerase II transcription by the phosphatase Rtr1R01GM099714 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOSLEY, AMBER L. · 2012 to 2021
$3.4M
Factors that regulate chromatin organization and gene transcriptionR01GM110058 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STRAHL, BRIAN D · 2014 to 2017
$1.2M
The Role of Spt6 in Genome Organization and StabilityF32GM116352 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KERSCHNER, JENNY L · 2015 to 2016
$92k
NCI NIH HHS T32 CA009156NIGMS NIH HHS F32 GM116352NIGMS NIH HHS R01 GM099714NIGMS NIH HHS R01 GM110058
6 · The paper itself

Abstract

Using affinity purification MS approaches, we have identified a novel role for casein kinase II (CKII) in the modification of the polymerase associated factor complex (PAF-C). Our data indicate that the facilitates chromatin transcription complex (FACT) interacts with CKII and may facilitate PAF complex phosphorylation. Posttranslational modification analysis of affinity-isolated PAF-C shows extensive CKII phosphorylation of all five subunits of PAF-C, although CKII subunits were not detected as interacting partners. Consistent with this, recombinant CKII or FACT-associated CKII isolated from cells can phosphorylate PAF-C in vitro, whereas no intrinsic kinase activity was detected in PAF-C samples. Significantly, PAF-C purifications combined with stable isotope labeling in cells (SILAC) quantitation for PAF-C phosphorylation from wild-type and CKII temperature-sensitive strains (cka1Δ cka2-8) showed that PAF-C phosphorylation at consensus CKII sites is significantly reduced in cka1Δ cka2-8 strains. Consistent with a role of CKII in FACT and PAF-C function, we show that decreased CKII function in vivo results in decreased levels of histone H2B lysine 123 monoubiquitylation, a modification dependent on FACT and PAF-C. Taken together, our results define a coordinated role of CKII and FACT in the regulation of RNA polymerase II transcription through chromatin via phosphorylation of PAF-C.

Indexed as

Casein Kinase IIChromatinHistonesPhosphorylationRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticUbiquitinationCasein Kinase IIChromatinHistonesRNA Polymerase IISaccharomyces cerevisiae Proteinscasein kinase IIchromatinFACThistone modificationPAF-Cphosphorylationquantitative proteomicsSILACtranscriptionubiquitylation (ubiquitination)

Identifiers

PMID27143358
PMCPMC4919428
OpenAlexW2470449370

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.