Evidence map›Paper›PMID 27142620›Full record

ArticleBMC genomics2016

Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton.

Gaëlle Lelandais, Ivo Scheiber, Javier Paz-Yepes, Jean-Claude Lozano, Hugo Botebol, Jana Pilátová, Vojtěch Žárský, Thibaut Léger, Pierre-Louis Blaiseau, Chris Bowler and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 40 citations in OpenAlex.

  1. Biohybrid Computing with Proteinoids and Algae.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  2. Zinc speciation promotes distinct effects on dinoflagellate growth and coral trypsin-like enzyme activity.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2025
    Article
  3. Discovery of sex in an extremophilic red alga.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Iron-dependent mutualism betweenISME communications · 2022
    Article
  6. Review
  7. Article
  8. Fe-S Protein Synthesis in Green Algae Mitochondria.Plants (Basel, Switzerland) · 2021
    Review
  9. Review
  10. Iron Uptake Mechanisms in Marine Phytoplankton.Frontiers in microbiology · 2020
    Review
  11. Review
  12. Article
  13. Regulating cellular trace metal economy in algae.Current opinion in plant biology · 2017
    Review
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Gaëlle LelandaisCNRS, Institut Jacques Monod, Université Paris Diderot-Paris 7, F-75013, Paris, France.
Ivo ScheiberDepartment of Parasitology, Faculty of Science, Charles University in Prague, 12844, Prague, Czech Republic.
Javier Paz-YepesEcole Normale Supérieure, PSL Research University, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), CNRS UMR 8197, INSERM U1024, 46 rue d'Ulm, F-75005, Paris, France.
Jean-Claude LozanoSorbonne Universités, University Pierre et Marie Curie, University of Paris VI, CNRS, Laboratoire d'Océanographie Microbienne, Observatoire Océanologique, F-66650, Banyuls-sur-Mer, France.
Hugo BotebolSorbonne Universités, University Pierre et Marie Curie, University of Paris VI, CNRS, Laboratoire d'Océanographie Microbienne, Observatoire Océanologique, F-66650, Banyuls-sur-Mer, France.
Jana PilátováDepartment of Parasitology, Faculty of Science, Charles University in Prague, 12844, Prague, Czech Republic.
Vojtěch ŽárskýDepartment of Parasitology, Faculty of Science, Charles University in Prague, 12844, Prague, Czech Republic.
Thibaut LégerCNRS, Institut Jacques Monod, Université Paris Diderot-Paris 7, F-75013, Paris, France.
Pierre-Louis BlaiseauSorbonne Universités, University Pierre et Marie Curie, University of Paris VI, CNRS, Laboratoire d'Océanographie Microbienne, Observatoire Océanologique, F-66650, Banyuls-sur-Mer, France.
Chris BowlerEcole Normale Supérieure, PSL Research University, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), CNRS UMR 8197, INSERM U1024, 46 rue d'Ulm, F-75005, Paris, France.
François-Yves BougetSorbonne Universités, University Pierre et Marie Curie, University of Paris VI, CNRS, Laboratoire d'Océanographie Microbienne, Observatoire Océanologique, F-66650, Banyuls-sur-Mer, France.
Jean-Michel CamadroCNRS, Institut Jacques Monod, Université Paris Diderot-Paris 7, F-75013, Paris, France.
Robert SutakDepartment of Parasitology, Faculty of Science, Charles University in Prague, 12844, Prague, Czech Republic. sutak@natur.cuni.cz.
Emmanuel LesuisseCNRS, Institut Jacques Monod, Université Paris Diderot-Paris 7, F-75013, Paris, France. emmanuel.lesuisse@ijm.fr.
Centre National de la Recherche Scientifique · FRUniversité Paris Cité · FRCharles University · CZInstitute of Parasitology · CZInstitut Jacques Monod · FRSorbonne Université · FRUniversité Paris Sciences et Lettres · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLow iron bioavailability is a common feature of ocean surface water and therefore micro-algae developed original strategies to optimize iron uptake and metabolism. The marine picoeukaryotic green alga Ostreococcus tauri is a very good model for studying physiological and genetic aspects of the adaptation of the green algal lineage to the marine environment: it has a very compact genome, is easy to culture in laboratory conditions, and can be genetically manipulated by efficient homologous recombination. In this study, we aimed at characterizing the mechanisms of iron assimilation in O. tauri by combining genetics and physiological tools. Specifically, we wanted to identify and functionally characterize groups of genes displaying tightly orchestrated temporal expression patterns following the exposure of cells to iron deprivation and day/night cycles, and to highlight unique features of iron metabolism in O. tauri, as compared to the freshwater model alga Chalamydomonas reinhardtii.

resultsWe used RNA sequencing to investigated the transcriptional responses to iron limitation in O. tauri and found that most of the genes involved in iron uptake and metabolism in O. tauri are regulated by day/night cycles, regardless of iron status. O. tauri lacks the classical components of a reductive iron uptake system, and has no obvious iron regulon. Iron uptake appears to be copper-independent, but is regulated by zinc. Conversely, iron deprivation resulted in the transcriptional activation of numerous genes encoding zinc-containing regulation factors. Iron uptake is likely mediated by a ZIP-family protein (Ot-Irt1) and by a new Fea1-related protein (Ot-Fea1) containing duplicated Fea1 domains. The adaptation of cells to iron limitation involved an iron-sparing response tightly coordinated with diurnal cycles to optimize cell functions and synchronize these functions with the day/night redistribution of iron orchestrated by ferritin, and a stress response based on the induction of thioredoxin-like proteins, of peroxiredoxin and of tesmin-like methallothionein rather than ascorbate. We briefly surveyed the metabolic remodeling resulting from iron deprivation.

conclusionsThe mechanisms of iron uptake and utilization by O. tauri differ fundamentally from those described in C. reinhardtii. We propose this species as a new model for investigation of iron metabolism in marine microalgae.

Indexed as

Adaptation, BiologicalChlorophytaCluster AnalysisCopperEukaryotaGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingHomeostasisIronIron CompoundsOxidation-ReductionPhotoperiodPhylogenyPhytoplanktonPlant ProteinsCopperIronIron CompoundsPlant ProteinsIronMarine phytoplanktonOstreococcusRNA-seq analysis

Identifiers

PMID27142620
PMCPMC4855317
OpenAlexW2345673981

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.