Evidence map›Paper›PMID 27141856›Full record

ArticleJournal of neuroscience methods2016

Array tomography of physiologically-characterized CNS synapses.

Ricardo A Valenzuela, Kristina D Micheva, Marianna Kiraly, Dong Li, Daniel V Madison

Open access · greenAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Q&A: Array tomography.BMC biology · 2018
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ricardo A ValenzuelaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Kristina D MichevaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Marianna KiralyDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Dong LiDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.
Daniel V MadisonDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305-5345, USA. Electronic address: madison@stanford.edu.
Stanford University · US

Funding

Synaptomes of Mouse and ManR01NS092474 · NINDS · ALLEN INSTITUTE · PI BURNS, RANDAL, SMITH, STEPHEN J · 2014 to 2018
$8.7M
Plasticity in Unitary Synaptic ConnectionsR01MH065541 · NIMH · STANFORD UNIVERSITY · PI MADISON, VERNON DANIEL · 2002 to 2014
$3.3M
Single synapse analysis of synaptic plasticity by combining electrophysiology and array tomographyR01MH111768 · NIMH · STANFORD UNIVERSITY · PI MADISON, VERNON DANIEL · 2017 to 2021
$2.9M
Single-Synapse Analysis of Neocortical Circuit PlasticityR01NS075252 · NINDS · STANFORD UNIVERSITY · PI MADISON, VERNON DANIEL, SMITH, STEPHEN J · 2011 to 2014
$2.0M
A Fast Proteometric Synapse Census PlatformR21MH099797 · NIMH · STANFORD UNIVERSITY · PI SMITH, STEPHEN J · 2012 to 2013
$406k
NIMH NIH HHS R01 MH065541NIMH NIH HHS R01 MH111768NIMH NIH HHS R21 MH099797NINDS NIH HHS R01 NS075252NINDS NIH HHS R01 NS092474
6 · The paper itself

Abstract

backgroundThe ability to correlate plastic changes in synaptic physiology with changes in synaptic anatomy has been very limited in the central nervous system because of shortcomings in existing methods for recording the activity of specific CNS synapses and then identifying and studying the same individual synapses on an anatomical level. NEW

methodWe introduce here a novel approach that combines two existing methods: paired neuron electrophysiological recording and array tomography, allowing for the detailed molecular and anatomical study of synapses with known physiological properties.

resultsThe complete mapping of a neuronal pair allows determining the exact number of synapses in the pair and their location. We have found that the majority of close appositions between the presynaptic axon and the postsynaptic dendrite in the pair contain synaptic specializations. The average release probability of the synapses between the two neurons in the pair is low, below 0.2, consistent with previous studies of these connections. Other questions, such as receptor distribution within synapses, can be addressed more efficiently by identifying only a subset of synapses using targeted partial reconstructions. In addition, time sensitive events can be captured with fast chemical fixation. COMPARISON WITH EXISTING

methodsCompared to existing methods, the present approach is the only one that can provide detailed molecular and anatomical information of electrophysiologically-characterized individual synapses.

conclusionsThis method will allow for addressing specific questions about the properties of identified CNS synapses, even when they are buried within a cloud of millions of other brain circuit elements.

Indexed as

Patch-Clamp TechniquesAnimalsCA3 Region, HippocampalExcitatory Postsynaptic PotentialsHippocampusMice, Inbred C57BLMicroscopy, FluorescencePyramidal CellsRats, Sprague-DawleyReceptors, AMPASynapsesTissue Culture TechniquesTissue FixationTomographyReceptors, AMPAArray tomographyHippocampusPaired recordingSynapsesSynaptic transmission

Identifiers

PMID27141856
PMCPMC5501355
OpenAlexW2345256426

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.