Evidence map›Paper›PMID 27141848›Full record

ArticleScientific reports2016

Whole Genome Re-Sequencing Identifies a Quantitative Trait Locus Repressing Carbon Reserve Accumulation during Optimal Growth in Chlamydomonas reinhardtii.

Hugh Douglas Goold, Hoa Mai Nguyen, Fantao Kong, Audrey Beyly-Adriano, Bertrand Légeret, Emmanuelle Billon, Stéphan Cuiné, Fred Beisson, Gilles Peltier, Yonghua Li-Beisson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Hugh Douglas GooldCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Hoa Mai NguyenCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Fantao KongCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Audrey Beyly-AdrianoCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Bertrand LégeretCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Emmanuelle BillonCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Stéphan CuinéCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Fred BeissonCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Gilles PeltierCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Yonghua Li-BeissonCEA, BIAM, Lab Bioenerget Biotechnol Bacteries &Microalgues, Saint-Paul-lez-Durance, 13108, France.
Aix-Marseille Université · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitut de Biosciences et Biotechnologies · FRCentre National de la Recherche Scientifique · FRThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microalgae have emerged as a promising source for biofuel production. Massive oil and starch accumulation in microalgae is possible, but occurs mostly when biomass growth is impaired. The molecular networks underlying the negative correlation between growth and reserve formation are not known. Thus isolation of strains capable of accumulating carbon reserves during optimal growth would be highly desirable. To this end, we screened an insertional mutant library of Chlamydomonas reinhardtii for alterations in oil content. A mutant accumulating five times more oil and twice more starch than wild-type during optimal growth was isolated and named constitutive oil accumulator 1 (coa1). Growth in photobioreactors under highly controlled conditions revealed that the increase in oil and starch content in coa1 was dependent on light intensity. Genetic analysis and DNA hybridization pointed to a single insertional event responsible for the phenotype. Whole genome re-sequencing identified in coa1 a >200 kb deletion on chromosome 14 containing 41 genes. This study demonstrates that, 1), the generation of algal strains accumulating higher reserve amount without compromising biomass accumulation is feasible; 2), light is an important parameter in phenotypic analysis; and 3), a chromosomal region (Quantitative Trait Locus) acts as suppressor of carbon reserve accumulation during optimal growth.

Indexed as

Quantitative Trait LociCarbonChlamydomonas reinhardtiiLightMetabolic Networks and PathwaysMutationOilsSequence Analysis, DNAStarchCarbonOilsStarch

Identifiers

PMID27141848
PMCPMC4855234
OpenAlexW2345981612

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.