Evidence map›Paper›PMID 27138190›Full record

ArticleBMC medical genetics2016

CNV analysis in 169 patients with bladder exstrophy-epispadias complex.

Catharina von Lowtzow, Andrea Hofmann, Rong Zhang, Florian Marsch, Anne-Karoline Ebert, Wolfgang Rösch, Raimund Stein, Thomas M Boemers, Karin Hirsch, Carlo Marcelis and 9 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Lessons Learned from CNV Analysis of Major Birth Defects.International journal of molecular sciences · 2020
    Review
  6. Article
  7. Article
  8. Evaluation of theHuman genome variation · 2018
    Article
  9. Role of the LF-SINE-Derived DistalJournal of pediatric genetics · 2017
    Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 11 institutions in 3 countries.

Catharina von LowtzowInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Andrea HofmannInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Rong ZhangInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Florian MarschInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Anne-Karoline EbertDepartment of Urology and Pediatric Urology, Ulm, Germany.
Wolfgang RöschDepartment of Pediatric Urology, St. Hedwig Hospital Barmherzige Brüder, Regensburg, Germany.
Raimund SteinDepartment of Pediatric and Adolescent Urology, University of Mannheim, Mannheim, Germany.
Thomas M BoemersDepartment of Pediatric Surgery and Pediatric Urology, Children's Hospital of Cologne, Cologne, Germany.
Karin HirschDepartment of Urology, Division of Pediatric Urology, University of Erlangen-Nürnberg, Erlangen, Germany.
Carlo MarcelisDepartment of Human Genetics, Radboud University Medical Centre, Nijmegen, The Netherlands.
Wouter F J FeitzPediatric Urology Center, Department of Urology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Alfredo BruscoDepartment of Medical Sciences and Medical Genetics Unit, Città della Salute e della Scienza University Hospital, University of Torino, Torino, Italy.
Nicola MigoneDepartment of Medical Sciences and Medical Genetics Unit, Città della Salute e della Scienza University Hospital, University of Torino, Torino, Italy.
Massimo Di GraziaInstitute for Maternal and Child Health, IRCCS Burlo Garofalo, Trieste, Italy.
Susanne MoebusInstitute of Medical Informatics, Biometry, and Epidemiology, University Hospital of Essen, University Duisburg-Essen, Essen, Germany.
Markus M NöthenInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Heiko ReutterInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Michael LudwigDepartment of Clinical Chemistry and Clinical Pharmacology, University of Bonn, Sigmund-Freud-Str. 25, Bonn, D-53127, Germany. mludwig@uni-bonn.de.
Markus DraakenInstitute of Human Genetics, University of Bonn, Bonn, Germany.
University of Bonn · DELife & Brain (Germany) · DEFriedrich-Alexander-Universität Erlangen-Nürnberg · DEIRCCS Materno Infantile Burlo Garofolo · ITKrankenhaus Barmherzige Brüder · DERadboud University Medical Center · NLRadboud University Nijmegen · NLUniversity Hospital Cologne · DEUniversity Hospital Ulm · DEUniversity of Duisburg-Essen · DEUniversity of Mannheim · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe bladder exstrophy-epispadias complex (BEEC) represents the severe end of the congenital uro-rectal malformation spectrum. Initial studies have implicated rare copy number variations (CNVs), including recurrent duplications of chromosomal region 22q11.21, in BEEC etiology.

methodsTo detect further CNVs, array analysis was performed in 169 BEEC patients. Prior to inclusion, 22q11.21 duplications were excluded using multiplex ligation-dependent probe amplification.

resultsFollowing the application of stringent filter criteria, seven rare CNVs were identified: n = 4, not present in 1307 in-house controls; n = 3, frequency of <0.002 in controls. These CNVs ranged from 1 to 6.08 Mb in size. To identify smaller CNVs, relaxed filter criteria used in the detection of previously reported BEEC associated chromosomal regions were applied. This resulted in the identification of six additional rare CNVs: n = 4, not present in 1307 in-house controls; n = 2, frequency <0.0008 in controls. These CNVs ranged from 0.03-0.08 Mb in size. For 10 of these 13 CNVs, confirmation and segregation analyses were performed (5 of maternal origin; 5 of paternal origin). Interestingly, one female with classic bladder extrophy carried a 1.18 Mb duplication of 22q11.1, a chromosomal region that is associated with cat eye syndrome.

conclusionsA number of rare CNVs were identified in BEEC patients, and these represent candidates for further evaluation. Rare inherited CNVs may constitute modifiers of, or contributors to, multifactorial BEEC phenotypes.

Indexed as

DNA Copy Number VariationsAneuploidyBladder ExstrophyChromosome DisordersChromosome DuplicationChromosomes, Human, Pair 22Cytogenetic AnalysisEye AbnormalitiesFemaleHumansMaleMaternal InheritanceOligonucleotide Array Sequence AnalysisPaternal InheritanceBladder exstrophy-epispadias complexCopy number variationEFNB1Genetic testing

Identifiers

PMID27138190
PMCPMC4852408
OpenAlexW2345028568

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.