Evidence map›Paper›PMID 27137867›Full record

ArticleScientific reports2016

CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.

Song Tan, Fang Liu, Xiao-Xi Pan, Yue-Peng Zang, Fei Jin, Wei-Xi Zu, Xiao-Ting Qi, Wei Xiao, Li-Ping Yin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. The Molecular Mechanisms Underlying Iron Deficiency Responses in Rice.International journal of molecular sciences · 2019
    Review
  8. Article
  9. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Song TanCollege of Life Science, Capital Normal University, Beijing 100048, China.
Fang LiuCollege of Life Science, Capital Normal University, Beijing 100048, China.
Xiao-Xi PanCollege of Life Science, Capital Normal University, Beijing 100048, China.
Yue-Peng ZangCollege of Life Science, Capital Normal University, Beijing 100048, China.
Fei JinCollege of Life Science, Capital Normal University, Beijing 100048, China.
Wei-Xi ZuCollege of Life Science, Capital Normal University, Beijing 100048, China.
Xiao-Ting QiCollege of Life Science, Capital Normal University, Beijing 100048, China.
Wei XiaoCollege of Life Science, Capital Normal University, Beijing 100048, China.
Li-Ping YinCollege of Life Science, Capital Normal University, Beijing 100048, China.
Capital Normal University · CNUniversity of Saskatchewan · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The COP9 signalosome (CSN) plays an important role in proteasome-mediated degradation by regulating CUL1 rubylation of the SCF ligase and is involved in many crucial biological processes. Here, we demonstrate a link between IDEF1 accumulation and the decline in COP9 derubylation activity in response to iron deficiency (-Fe) in rice (Oryza sativa). CSN6 expression is rapidly down-regulated during Fe depletion, contributing to reduced CSN activity, as judged by CSN5 and CUL1 expression, indicating CSN6 is involved in the early stage response of -Fe. In contrast to CSN6, the IDEF1 protein and expression of several iron uptake/utilisation-related genes are increased in response to -Fe. Thus, we constructed CSN6 transgenic sense and antisense lines and found that experimental depletion of CSN6 results in accumulation of the IDEF1 protein and up-regulation of several iron uptake/utilisation-related genes. Furthermore, IDEF1 can be decorated with K48-linked polyubiquitin and degraded via the 26S proteasome. Accumulated IDEF1 in antisense lines led to increased chlorophyll and Fe content in seedlings during -Fe. Collectively, the cellular CSN6 level is decreased during early stages of -Fe to ensure the rapid accumulation of IDEF1, which in turn up-regulates several iron uptake/utilisation-related genes to help overcome -Fe stress in rice.

Indexed as

Adaptor Proteins, Signal TransducingCell NucleusCOP9 Signalosome ComplexCullin ProteinsGene Expression Regulation, PlantIronIron DeficienciesMultiprotein ComplexesOryzaProteasome Endopeptidase ComplexAdaptor Proteins, Signal TransducingATP dependent 26S proteaseCOP9 Signalosome ComplexCullin ProteinsIronMultiprotein ComplexesProteasome Endopeptidase Complex

Identifiers

PMID27137867
PMCPMC4853791
OpenAlexW2345717647

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.