Evidence map›Paper›PMID 27137136›Full record

ArticleChemical research in toxicology2016

Structure-Function Studies of Naphthalene, Phenanthrene, Biphenyl, and Their Derivatives in Interaction with and Oxidation by Cytochromes P450 2A13 and 2A6.

Tsutomu Shimada, Shigeo Takenaka, Kensaku Kakimoto, Norie Murayama, Young-Ran Lim, Donghak Kim, Maryam K Foroozesh, Hiroshi Yamazaki, F Peter Guengerich, Masayuki Komori

Open access · greenAbstract read
In one paragraph

Article in Chemical research in toxicology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. General Prelithiation Approaches and the Corresponding Full Cell Design.Advanced materials (Deerfield Beach, Fla.) · 2026
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  6. Small Airway Susceptibility to Chemical and Particle Injury.Respiration; international review of thoracic diseases · 2022
    Review
  7. Genetic and Enzymatic Characteristics of CYP2A13 in Relation to Lung Damage.International journal of molecular sciences · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Cytochrome P450 2A6 and other human P450 enzymes in the oxidation of flavone and flavanone.Xenobiotica; the fate of foreign compounds in biological systems · 2019
    Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Tsutomu ShimadaLaboratory of Cellular and Molecular Biology, Graduate School of Life and Environmental Sciences, Osaka Prefecture University , 1-58 Rinku-Orai-Kita, Izumisano, Osaka 598-8531, Japan.
Shigeo TakenakaLaboratory of Cellular and Molecular Biology, Graduate School of Life and Environmental Sciences, Osaka Prefecture University , 1-58 Rinku-Orai-Kita, Izumisano, Osaka 598-8531, Japan.
Kensaku KakimotoOsaka Prefectural Institute of Public Health , 1-3-69 Nakamichi, Higashinari-ku, Osaka 537-0025, Japan.
Norie MurayamaLaboratory of Drug Metabolism and Pharmacokinetics, Showa Pharmaceutical University , Machida, Tokyo 194-8543, Japan.
Young-Ran LimDepartment of Biological Sciences, Konkuk University , Seoul 143-701, Republic of Korea.
Donghak KimDepartment of Biological Sciences, Konkuk University , Seoul 143-701, Republic of Korea.
Maryam K ForoozeshDepartment of Chemistry, Xavier University of Louisiana , New Orleans, Louisiana 70125, United States.
Hiroshi YamazakiLaboratory of Drug Metabolism and Pharmacokinetics, Showa Pharmaceutical University , Machida, Tokyo 194-8543, Japan.
F Peter GuengerichDepartment of Biochemistry, Vanderbilt University School of Medicine , Nashville, Tennessee 37232-0146, United States.
Masayuki KomoriLaboratory of Cellular and Molecular Biology, Graduate School of Life and Environmental Sciences, Osaka Prefecture University , 1-58 Rinku-Orai-Kita, Izumisano, Osaka 598-8531, Japan.
Osaka Prefecture University · JPKonkuk University · KRShowa Pharmaceutical University · JPOsaka Prefectural Institute of Public Health · JPVanderbilt University · USXavier University of Louisiana · US

Funding

Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
Xavier's RCMI Cancer Research ProgramG12MD007595 · NIMHD · XAVIER UNIVERSITY OF LOUISIANA · PI D'AMOUR, GENE, WANG, GUANGDI · 2012 to 2018
$15.7M
X RAY MODELING OF DOPAMINE AGONISTSS06GM008008 · NIGMS · XAVIER UNIVERSITY OF LOUISIANA · PI FOROOZESH, MARYAM · 1989 to 2007
$9.5M
Metabolism of Carcinogens and Drugs by Human P450sR37CA090426 · NCI · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 2006 to 2015
$3.6M
Metabolism of Carcinogens and Drugs by Human P450sR01GM118122 · NIGMS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 2016 to 2023
$3.3M
Metabolism of Carcinogens and Drugs by Human P450sR01CA090426 · NCI · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 2001 to 2005
$1.7M
NCI NIH HHS R01 CA090426NCI NIH HHS R37 CA090426NIEHS NIH HHS P30 ES000267NIGMS NIH HHS R01 GM118122NIGMS NIH HHS S06 GM008008NIMHD NIH HHS G12 MD007595
6 · The paper itself

Abstract

Naphthalene, phenanthrene, biphenyl, and their derivatives having different ethynyl, propynyl, butynyl, and propargyl ether substitutions were examined for their interaction with and oxidation by cytochromes P450 (P450) 2A13 and 2A6. Spectral interaction studies suggested that most of these chemicals interacted with P450 2A13 to induce Type I binding spectra more readily than with P450 2A6. Among the various substituted derivatives examined, 2-ethynylnaphthalene, 2-naphthalene propargyl ether, 3-ethynylphenanthrene, and 4-biphenyl propargyl ether had larger ΔAmax/Ks values in inducing Type I binding spectra with P450 2A13 than their parent compounds. P450 2A13 was found to oxidize naphthalene, phenanthrene, and biphenyl to 1-naphthol, 9-hydroxyphenanthrene, and 2- and/or 4-hydroxybiphenyl, respectively, at much higher rates than P450 2A6. Other human P450 enzymes including P450s 1A1, 1A2, 1B1, 2C9, and 3A4 had lower rates of oxidation of naphthalene, phenanthrene, and biphenyl than P450s 2A13 and 2A6. Those alkynylated derivatives that strongly induced Type I binding spectra with P450s 2A13 and 2A6 were extensively oxidized by these enzymes upon analysis with HPLC. Molecular docking studies supported the hypothesis that ligand-interaction energies (U values) obtained with reported crystal structures of P450 2A13 and 2A6 bound to 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone, indole, pilocarpine, nicotine, and coumarin are of use in understanding the basis of possible molecular interactions of these xenobiotic chemicals with the active sites of P450 2A13 and 2A6 enzymes. In fact, the ligand-interaction energies with P450 2A13 4EJG bound to these chemicals were found to relate to their induction of Type I binding spectra.

Indexed as

Aryl Hydrocarbon HydroxylasesBiphenyl CompoundsCytochrome P-450 CYP2A6HumansMolecular StructureNaphthalenesOxidation-ReductionPhenanthrenesAryl Hydrocarbon HydroxylasesbiphenylBiphenyl CompoundsCYP2A13 protein, humanCytochrome P-450 CYP2A6NaphthalenesPhenanthrenes

Identifiers

PMID27137136
PMCPMC5293596
OpenAlexW2345809852

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.