Evidence map›Paper›PMID 27135509›Full record

ArticlePlants (Basel, Switzerland)2014

Expression of the Arabidopsis Sigma Factor SIG5 Is Photoreceptor and Photosynthesis Controlled.

Marina Mellenthin, Ulrike Ellersiek, Anna Börger, Margarete Baier

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 33 citations in OpenAlex.

  1. Circadian and environmental signal integration in a natural population ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Article
  4. PSI Photoinhibition and Changing COAntioxidants (Basel, Switzerland) · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Marina MellenthinPlant Sciences, Heinrich-Heine-Universität, Universitätsstraße 1, Düsseldorf 40225, Germany. marina.mellenthin@uni-duesseldorf.de.
Ulrike EllersiekPlant Sciences, Heinrich-Heine-Universität, Universitätsstraße 1, Düsseldorf 40225, Germany. ulrike.ellersiek@uni-duesseldorf.de.
Anna BörgerPlant Physiology, Freie Universität Berlin, Königin-Luise-Straße 12-16, Berlin 14195, Germany. anna.boerger@fu-berlin.de.
Margarete BaierPlant Physiology, Freie Universität Berlin, Königin-Luise-Straße 12-16, Berlin 14195, Germany. margarete.baier@fu-berlin.de.
Freie Universität Berlin · DEHeinrich Heine University Düsseldorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two collections of Arabidopsis GAL4 enhancer trap lines were screened for light-intensity dependent reporter gene activation. Line N9313 was isolated for its strong light-intensity regulation. The T-DNA element trapped distant enhancers of the SIG5 promoter, which drives expression of a sigma factor involved in regulation of chloroplast genes for photosystem II core proteins. The T-DNA insertion 715 bp upstream of the transcription initiation site splits the promoter in a distal and proximal part. Both parts are sensitive to blue and red light and depend on photosynthetic electron transport activity between photosystem II and the plastoquinone pool. The mainblue-light sensitivity is localized within a 196-bp sequence (-887 to -691 bp) in the proximal promoter region It is preferentially CRY1 and PHYB controlled. Type-I and type-II phytochromes mediate red-light sensitivity via various promoter elements spread over the proximal and distal upstream region. This work characterizes SIG5 as an anterograde control factor of chloroplast gene expression, which is controlled by chloroplast signals in a retrograde manner.

Indexed as

cryptochromephotosynthesisphotosystem IIphytochromeplastoquinoneretrograde signalSIG5sigma factor

Identifiers

PMID27135509
PMCPMC4844344
OpenAlexW2079123673

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.