Evidence map›Paper›PMID 27135319›Full record

ArticlePlants (Basel, Switzerland)2015

Identification of the Abundant Hydroxyproline-Rich Glycoproteins in the Root Walls of Wild-Type Arabidopsis, an ext3 Mutant Line, and Its Phenotypic Revertant.

Yuning Chen, Dening Ye, Michael A Held, Maura C Cannon, Tui Ray, Prasenjit Saha, Alexandra N Frye, Andrew J Mort, Marcia J Kieliszewski

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The Cell Wall Proteome ofFrontiers in plant science · 2021
    Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yuning ChenDepartment of Chemistry and Biochemistry, Ohio University, Athens, OH 45701, USA. yuc27@psu.edu.
Dening YeDepartment of Chemistry and Biochemistry, Ohio University, Athens, OH 45701, USA. Boxofjacky@gmail.com.
Michael A HeldDepartment of Chemistry and Biochemistry, Ohio University, Athens, OH 45701, USA. held@ohio.edu.
Maura C CannonDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA. mcannon@biochem.umass.edu.
Tui RayDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA. tuiray76@gmail.com.
Prasenjit SahaDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA. sahap76@gmail.com.
Alexandra N FryeDepartment of Chemistry and Biochemistry, Ohio University, Athens, OH 45701, USA. af844006@gmail.com.
Andrew J MortBiochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078, USA. Andrew.mort@okstate.edu.
Marcia J KieliszewskiDepartment of Chemistry and Biochemistry, Ohio University, Athens, OH 45701, USA. kielisze@helios.phy.ohiou.edu.
Ohio University · USUniversity of Massachusetts Amherst · USOklahoma State University · US

Funding

RENOVATION OF BIOCHEMISTRY LABORATORIESC06RR014575 · NCRR · OHIO UNIVERSITY ATHENS · PI FLEMMING, LESLIE A · 1999 to 1999
–
NCRR NIH HHS C06 RR014575
6 · The paper itself

Abstract

Extensins are members of the cell wall hydroxyproline-rich glycoprotein (HRGP) superfamily that form covalently cross-linked networks in primary cell walls. A knockout mutation in EXT3 (AT1G21310), the gene coding EXTENSIN 3 (EXT3) in Arabidopsis Landsberg erecta resulted in a lethal phenotype, although about 20% of the knockout plants have an apparently normal phenotype (ANP). In this study the root cell wall HRGP components of wild-type, ANP and the ext3 mutant seedlings were characterized by peptide fractionation of trypsin digested anhydrous hydrogen fluoride deglycosylated wall residues and by sequencing using LC-MS/MS. Several HRGPs, including EXT3, were identified in the wild-type root walls but not in walls of the ANP and lethal mutant. Indeed the ANP walls and walls of mutants displaying the lethal phenotype possessed HRGPs, but the profiles suggest that changes in the amount and perhaps type may account for the corresponding phenotypes.

Indexed as

Arabidopsis rootcell wallExtensin 3hydroxyproline-rich glycoproteinLRXproteomicsPRP4

Identifiers

PMID27135319
PMCPMC4844335
OpenAlexW1998441254

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.