Evidence map›Paper›PMID 27133896›Full record

ArticleThe Plant journal : for cell and molecular biology2016

Differential effector gene expression underpins epistasis in a plant fungal disease.

Huyen T T Phan, Kasia Rybak, Eiko Furuki, Susan Breen, Peter S Solomon, Richard P Oliver, Kar-Chun Tan

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 98 citations in OpenAlex.

  1. Identification of septoria nodorum blotch susceptibility genes in hard winter wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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  3. Abscisic Acid Can Play a Dual Role in thePlants (Basel, Switzerland) · 2025
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  10. Identification of WheatPlants (Basel, Switzerland) · 2024
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  12. Review
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  14. Genome-wide association mapping of septoria nodorum blotch resistance in Nordic winter and spring wheat collections.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  15. Article
  16. Article
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  19. Review
  20. Extracellular Vesicles fromJournal of fungi (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Huyen T T PhanCentre for Crop and Disease Management, Department of Environment and Agriculture, Curtin University, Bentley, WA, 6102, Australia.
Kasia RybakCentre for Crop and Disease Management, Department of Environment and Agriculture, Curtin University, Bentley, WA, 6102, Australia.
Eiko FurukiCentre for Crop and Disease Management, Department of Environment and Agriculture, Curtin University, Bentley, WA, 6102, Australia.
Susan BreenPlant Sciences Division, Research School of Biology, The Australian National University, Canberra, ACT, Australia.
Peter S SolomonPlant Sciences Division, Research School of Biology, The Australian National University, Canberra, ACT, Australia.
Richard P OliverCentre for Crop and Disease Management, Department of Environment and Agriculture, Curtin University, Bentley, WA, 6102, Australia. Richard.Oliver@curtin.edu.au.
Kar-Chun TanCentre for Crop and Disease Management, Department of Environment and Agriculture, Curtin University, Bentley, WA, 6102, Australia. Kar-Chun.Tan@curtin.edu.au.ORCID 0000-0001-6094-823X
Curtin University · AUAustralian National University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungal effector-host sensitivity gene interactions play a key role in determining the outcome of septoria nodorum blotch disease (SNB) caused by Parastagonospora nodorum on wheat. The pathosystem is complex and mediated by interaction of multiple fungal necrotrophic effector-host sensitivity gene systems. Three effector sensitivity gene systems are well characterized in this pathosystem; SnToxA-Tsn1, SnTox1-Snn1 and SnTox3-Snn3. We tested a wheat mapping population that segregated for Snn1 and Snn3 with SN15, an aggressive P. nodorum isolate that produces SnToxA, SnTox1 and SnTox3, to study the inheritance of sensitivity to SnTox1 and SnTox3 and disease susceptibility. Interval quantitative trait locus (QTL) mapping showed that the SnTox1-Snn1 interaction was paramount in SNB development on both seedlings and adult plants. No effect of the SnTox3-Snn3 interaction was observed under SN15 infection. The SnTox3-Snn3 interaction was however, detected in a strain of SN15 in which SnTox1 had been deleted (tox1-6). Gene expression analysis indicates increased SnTox3 expression in tox1-6 compared with SN15. This indicates that the failure to detect the SnTox3-Snn3 interaction in SN15 is due - at least in part - to suppressed expression of SnTox3 mediated by SnTox1. Furthermore, infection of the mapping population with a strain deleted in SnToxA, SnTox1 and SnTox3 (toxa13) unmasked a significant SNB QTL on 2DS where the SnTox2 effector sensitivity gene, Snn2, is located. This QTL was not observed in SN15 and tox1-6 infections and thus suggesting that SnToxA and/or SnTox3 were epistatic. Additional QTLs responding to SNB and effectors sensitivity were detected on 2AS1 and 3AL.

Indexed as

Epistasis, GeneticAscomycotaFungal ProteinsHost-Pathogen InteractionsMycotoxinsPlant DiseasesPlant ProteinsQuantitative Trait LociSeedlingsTriticumFungal ProteinsMycotoxinsPlant ProteinsepistasisNEnecrotrophic effectorParastagonospora nodorumSnTox1SnTox3Triticum aestivum

Identifiers

PMID27133896
PMCPMC5053286
OpenAlexW2342781368

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.