Evidence map›Paper›PMID 27133568›Full record

ArticleThe journal of physical chemistry. B2016

Molecular Effects of cTnC DCM Mutations on Calcium Sensitivity and Myofilament Activation-An Integrated Multiscale Modeling Study.

Sukriti Dewan, Kimberly J McCabe, Michael Regnier, Andrew D McCulloch, Steffen Lindert

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

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  14. Computational models in cardiology.Nature reviews. Cardiology · 2019
    Review
  15. Computational Studies of Cardiac and Skeletal Troponin.Frontiers in molecular biosciences · 2019
    Review
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Sukriti DewanDepartment of Bioengineering, University of California at San Diego , La Jolla, California 92093, United States.
Kimberly J McCabeDepartment of Bioengineering, University of California at San Diego , La Jolla, California 92093, United States.
Michael RegnierDepartment of Bioengineering, University of Washington , Seattle, Washington 98195, United States.
Andrew D McCullochDepartment of Bioengineering, University of California at San Diego , La Jolla, California 92093, United States.
Steffen LindertDepartment of Chemistry & Biochemistry, Ohio State University , Columbus, Ohio 43210, United States.
The Ohio State University · USUniversity of Washington · US

Funding

Vinculin and Talin in Cardiocyte Integrity and AdhesionP01HL046345 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KNOWLTON, KIRK U · 1992 to 2011
$25.0M
TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BAHAR, IVET · 2012 to 2021
$16.3M
National Biomedical Computation Resource - Competitive Revision SupplementP41GM103426 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2012 to 2019
$14.0M
The Virtual Physiological Rat ProjectP50GM094503 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BEARD, DANIEL A · 2011 to 2015
$11.6M
Systems Biology CoreP01HL098053 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HADDAD, GABRIEL G · 2010 to 2014
$10.2M
MOLECULAR BASIS OF ENDOTHELIAL MECHANICS AND ADHESIONP01HL043026 · NHLBI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI SCHMID-SCHOENBEIN, GEERT W. · 1990 to 2005
$8.3M
Bioengineering Cardiovascular Training GrantT32EB001650 · NIBIB · UNIVERSITY OF WASHINGTON · PI REGNIER, MICHAEL · 2004 to 2019
$3.6M
Multi-scale Systems Model of Murine Heart FailureR01HL105242 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BERS, DONALD M, MCCULLOCH, ANDREW D. · 2012 to 2016
$3.5M
Analyzing the Cardiac Power Grid: Adaptive responses to fluctuating local demandU01HL122199 · NHLBI · UNIVERSITY OF WASHINGTON · PI BEARD, DANIEL A, DASH, RANJAN K · 2015 to 2019
$3.3M
EFFECT OF R1R2 OVER-EXPRESSION ON CARDIAC FUNCTIONR01HL111197 · NHLBI · UNIVERSITY OF WASHINGTON · PI REGNIER, MICHAEL · 2012 to 2015
$2.3M
Howard Hughes Medical InstituteNHLBI NIH HHS P01 HL043026NHLBI NIH HHS P01 HL046345NHLBI NIH HHS P01 HL098053NHLBI NIH HHS R01 HL105242NHLBI NIH HHS R01 HL111197NHLBI NIH HHS U01 HL122199NIBIB NIH HHS T32 EB001650NIGMS NIH HHS P41 GM103426NIGMS NIH HHS P41 GM103712NIGMS NIH HHS P50 GM094503
6 · The paper itself

Abstract

Mutations in cardiac troponin C (D75Y, E59D, and G159D), a key regulatory protein of myofilament contraction, have been associated with dilated cardiomyopathy (DCM). Despite reports of altered myofilament function in these mutants, the underlying molecular alterations caused by these mutations remain elusive. Here we investigate in silico the intramolecular mechanisms by which these mutations affect myofilament contraction. On the basis of the location of cardiac troponin C (cTnC) mutations, we tested the hypothesis that intramolecular effects can explain the altered myofilament calcium sensitivity of force development for D75Y and E59D cTnC, whereas altered cardiac troponin C-troponin I (cTnC-cTnI) interaction contributes to the reported contractile effects of the G159D mutation. We employed a multiscale approach combining molecular dynamics (MD) and Brownian dynamics (BD) simulations to estimate cTnC calcium association and hydrophobic patch opening. We then integrated these parameters into a Markov model of myofilament activation to compute the steady-state force-pCa relationship. The analysis showed that myofilament calcium sensitivity with D75Y and E59D can be explained by changes in calcium binding affinity of cTnC and the rate of hydrophobic patch opening, if a partial cTnC interhelical opening angle (110°) is sufficient for cTnI switch peptide association to cTnC. In contrast, interactions between cTnC and cTnI within the cardiac troponin complex must also be accounted for to explain contractile alterations due to G159D. In conclusion, this is the first multiscale in silico study to elucidate how direct molecular effects of genetic mutations in cTnC translate to altered myofilament contractile function.

Indexed as

MutationAmino Acid SequenceAmino Acid SubstitutionAnimalsBinding SitesCalciumCardiomyopathy, HypertrophicCrystallography, X-RayHumansHydrophobic and Hydrophilic InteractionsMarkov ChainsMolecular Dynamics SimulationMyocardial ContractionMyocardiumMyofibrilsProtein BindingCalciumTroponin CTroponin I

Identifiers

PMID27133568
PMCPMC5001916
OpenAlexW2345003636

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.