Evidence map›Paper›PMID 27133132›Full record

ArticleCell metabolism2016

Age-Dependent Pancreatic Gene Regulation Reveals Mechanisms Governing Human β Cell Function.

H Efsun Arda, Lingyu Li, Jennifer Tsai, Eduardo A Torre, Yenny Rosli, Heshan Peiris, Robert C Spitale, Chunhua Dai, Xueying Gu, Kun Qu and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell metabolism, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed, 1 pooled it
25.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 1 synthesis or guideline pooled it, 241 citations in OpenAlex.

  1. Pooled it
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  8. Review
  9. Article
  10. SIX3 as a Regulator of Development and Disease.Journal of developmental biology · 2026
    Review
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100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 2 countries.

H Efsun ArdaDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Lingyu LiDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Jennifer TsaiDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Eduardo A TorreProgram in Epithelial Biology, Department of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Yenny RosliDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Heshan PeirisDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Robert C SpitaleProgram in Epithelial Biology, Department of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Chunhua DaiDivision of Diabetes, Endocrinology, and Metabolism, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Xueying GuDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Kun QuProgram in Epithelial Biology, Department of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Pei WangDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Jing WangDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Markus GrompeOregon Stem Cell Center, Oregon Health & Science University, Portland, OR 97239, USA.
Raphael ScharfmannINSERM U1016, Institut Cochin, Université Paris Descartes, Sorbonne Paris Cité, Paris 75014, France.
Michael S SnyderDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Rita BottinoInstitute of Cellular Therapeutics, Allegheny Health Network, 320 East North Avenue, Pittsburgh, PA 15212, USA.
Alvin C PowersDivision of Diabetes, Endocrinology, and Metabolism, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA; Department of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN 37212, USA.
Howard Y ChangProgram in Epithelial Biology, Department of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA.
Seung K KimDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Medicine (Oncology Division), Stanford University School of Medicine, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: seungkim@stanford.edu.
Stanford University · USAllegheny Health Network · USHoward Hughes Medical Institute · USInserm · FROregon Health & Science University · USVanderbilt University · USVanderbilt University Medical Center · US

Funding

Coordinating Center for Beta Cell Biology ConsortiumU01DK072473 · NIDDK · VANDERBILT UNIVERSITY · PI MAGNUSON, MARK A · 2005 to 2014
$61.0M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OWEN P MCGUINNESS · 2012 to 2026
$29.3M
TRANSGENIC MOUSE/ ES CELL SHARES RESOURCESP60DK020593 · NIDDK · VANDERBILT UNIVERSITY · PI MCGUINNESS, OWEN P · 1986 to 2011
$28.1M
Molecular Mechanisms of Human and Murine Beta Cell Proliferation and RegenerationU01DK089572 · NIDDK · VANDERBILT UNIVERSITY · PI GREINER, DALE LESLIE, HARLAN, DAVID MARSHALL · 2010 to 2014
$8.4M
Diabetes, Endocrinology and Metabolism Training GrantT32DK007217 · NIDDK · STANFORD UNIVERSITY · PI Justin Pierce Annes, David Matthew Maahs · 1987 to 2026
$7.2M
Molecular Mechanisms of Physiologic Beta Cell Growth in Juvenile Human PancreasUC4DK104211 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KIM, SEUNG K, POWERS, ALVIN C · 2014 to 2015
$4.0M
In vivo targeting of diabetes-relevant human cell types with rAAV vectorsUC4DK104143 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GROMPE, MARKUS, KAY, MARK A · 2014 to 2014
$3.6M
Epigenetic and Genetic Control of Human and Murine Beta Cell Development and FateU01DK089532 · NIDDK · STANFORD UNIVERSITY · PI KIM, SEUNG K · 2010 to 2014
$3.4M
Islet alterations in type 2 diabetesI01BX000666 · VA · VETERANS HEALTH ADMINISTRATION · PI POWERS, ALVIN C · 2011 to 2025
–
BLRD VA I01 BX000666NIDDK NIH HHS P30 DK020593NIDDK NIH HHS P60 DK020593NIDDK NIH HHS T32 DK007217NIDDK NIH HHS U01 DK072473NIDDK NIH HHS U01 DK089532NIDDK NIH HHS U01 DK089572NIDDK NIH HHS UC4 DK104143NIDDK NIH HHS UC4 DK104211
6 · The paper itself

Abstract

Intensive efforts are focused on identifying regulators of human pancreatic islet cell growth and maturation to accelerate development of therapies for diabetes. After birth, islet cell growth and function are dynamically regulated; however, establishing these age-dependent changes in humans has been challenging. Here, we describe a multimodal strategy for isolating pancreatic endocrine and exocrine cells from children and adults to identify age-dependent gene expression and chromatin changes on a genomic scale. These profiles revealed distinct proliferative and functional states of islet α cells or β cells and histone modifications underlying age-dependent gene expression changes. Expression of SIX2 and SIX3, transcription factors without prior known functions in the pancreas and linked to fasting hyperglycemia risk, increased with age specifically in human islet β cells. SIX2 and SIX3 were sufficient to enhance insulin content or secretion in immature β cells. Our work provides a unique resource to study human-specific regulators of islet cell maturation and function.

Indexed as

Gene Expression Regulation, DevelopmentalAdultAgingCell DifferentiationCell SeparationChildChild, PreschoolChromatinChromatin ImmunoprecipitationDiabetes MellitusHistone CodeHomeodomain ProteinsHumansInfantInsulin-Secreting CellsMiddle AgedChromatinHomeodomain ProteinsTranscription Factors

Identifiers

PMID27133132
PMCPMC4864151
OpenAlexW2343369957

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.