Evidence map›Paper›PMID 27132888›Full record

ArticleStem cell reports2016

Mechanism and Role of SOX2 Repression in Seminoma: Relevance to Human Germline Specification.

Ritu Kushwaha, Nirmala Jagadish, Manjunath Kustagi, Geetu Mendiratta, Marco Seandel, Rekha Soni, James E Korkola, Venkata Thodima, Andrea Califano, George J Bosl and 1 more

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Epigenetic Regulation of Driver Genes in Testicular Tumorigenesis.International journal of molecular sciences · 2023
    Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Ritu KushwahaCell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
Nirmala JagadishCell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
Manjunath KustagiDepartment of Systems Biology, Columbia University, New York, NY 10032, USA.
Geetu MendirattaCell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
Marco SeandelDepartment of Surgery, Weill Cornell Medical Center, New York, NY 10065, USA.
Rekha SoniCell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
James E KorkolaCell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
Venkata ThodimaCancer Genetics, Inc., Rutherford, NJ 07070, USA.
Andrea CalifanoDepartment of Systems Biology, Columbia University, New York, NY 10032, USA.
George J BoslDepartment of Medicine, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
R S K ChagantiCell Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA. Electronic address: chagantr@mskcc.org.
Memorial Sloan Kettering Cancer Center · USColumbia University · USCancer Genetics (United States) · USCornell University · US

Funding

Predicting Cancer Cell Response to Endogenous and Exogenous Perturbations at the Single Cell LevelR35CA197745 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREA CALIFANO · 2015 to 2026
$11.5M
NCI NIH HHS R35 CA197745
6 · The paper itself

Abstract

Human male germ cell tumors (GCTs) are derived from primordial germ cells (PGCs). The master pluripotency regulator and neuroectodermal lineage effector transcription factor SOX2 is repressed in PGCs and the seminoma (SEM) subset of GCTs. The mechanism of SOX2 repression and its significance to GC and GCT development currently are not understood. Here, we show that SOX2 repression in SEM-derived TCam-2 cells is mediated by the Polycomb repressive complex (PcG) and the repressive H3K27me3 chromatin mark that are enriched at its promoter. Furthermore, SOX2 repression in TCam-2 cells can be abrogated by recruitment of the constitutively expressed H3K27 demethylase UTX to the SOX2 promoter through retinoid signaling, leading to expression of neuronal and other lineage genes. SOX17 has been shown to initiate human PGC specification, with its target PRDM1 suppressing mesendodermal genes. Our results are consistent with a role for SOX2 repression in normal germline development by suppressing neuroectodermal genes.

Indexed as

Cell LineageChromatinGene Expression Regulation, NeoplasticGerm CellsHistone DemethylasesHumansMaleNeoplasms, Germ Cell and EmbryonalNuclear ProteinsPolycomb-Group ProteinsPositive Regulatory Domain I-Binding Factor 1Promoter Regions, GeneticSeminomaSOXB1 Transcription FactorsSOXF Transcription FactorsTesticular NeoplasmsChromatinHistone DemethylasesKDM6A protein, humanNuclear ProteinsPolycomb-Group ProteinsPositive Regulatory Domain I-Binding Factor 1PRDM1 protein, humanSOX17 protein, humanSOX2 protein, humanSOXB1 Transcription FactorsSOXF Transcription Factors

Identifiers

PMID27132888
PMCPMC4939754
OpenAlexW2345231879

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.