Evidence map›Paper›PMID 27132877›Full record

ArticleJournal of clinical laboratory analysis2016

Genetic Characteristics of Polycythemia Vera and Essential Thrombocythemia in Korean Patients.

Eun-Hyung Yoo, Kyung-Jin Park, Hong-Hee Won, Jun-Hee Park, Jong-Ho Park, Seung-Tae Lee, Hee-Jin Kim, Soo-Mee Bang, Hyun-Sook Chi, Chul Won Jung and 13 more

Abstract readMulticenter Study
In one paragraph

Article in Journal of clinical laboratory analysis, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it, 1 citations in OpenAlex.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 3 countries.

Eun-Hyung YooDepartment of Laboratory Medicine, Konyang University Hospital, Myunggok Medical Research Institute, College of Medicine, Konyang University, Daejeon, Korea.
Kyung-Jin ParkDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Science and Technology (SAIHST), Sungkyunkwan University, Seoul, Korea.
Hong-Hee WonDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Science and Technology (SAIHST), Sungkyunkwan University, Seoul, Korea.
Jun-Hee ParkDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Science and Technology (SAIHST), Sungkyunkwan University, Seoul, Korea.
Jong-Ho ParkDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Science and Technology (SAIHST), Sungkyunkwan University, Seoul, Korea.
Seung-Tae LeeDepartment of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Hee-Jin KimDepartment of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Soo-Mee BangDepartment of Internal Medicine, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam, Korea.
Hyun-Sook ChiDepartment of Laboratory Medicine, University of Ulsan College of Medicine and Asan Medical Center, Seoul, Korea.
Chul Won JungDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Sun-Hee KimDepartment of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Hongseok YunSamsung SDS, Seoul, Korea.
Choong-Hyun SunSamsung SDS, Seoul, Korea.
Inho ParkSamsung SDS, Seoul, Korea.
Seungmook LeeSamsung SDS, Seoul, Korea.
Clarence LeeThermo Fisher Scientific, Carlsbad, California.
Barry MerrimanThermo Fisher Scientific, Carlsbad, California.
Raymond LuoThermo Fisher Scientific, Singapore, Singapore.
Eileen Hwee Hong TanThermo Fisher Scientific, Singapore, Singapore.
Keun-Joon ParkThermo Fisher Scientific, Seoul, Korea.
Na-Kyung YooThermo Fisher Scientific, Seoul, Korea.
Jason J KangThermo Fisher Scientific, Carlsbad, California.
Jong-Won KimDepartment of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea. kimjw@skku.edu.
Samsung Medical Center · KRThermo Fisher Scientific (Israel) · ILThermo Fisher Scientific (United States) · USSungkyunkwan University · KRSamsung SDS (South Korea)Konyang University · KRSeoul National University Bundang Hospital · KRUlsan College · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDespite recent advances in the investigation of myeloproliferative neoplasms (MPN), the impact of genetic heterogeneity on its molecular pathogenesis has not been fully elucidated. Thus, in this study, we aim to characterize the genetic complexity in Korean patients with polycythemia vera (PV) and essential thrombocythemia (ET).

methodsWe conducted association studies using 84 single-nucleotide polymorphisms (SNPs) in 229 patients (96 with PV and 133 with ET) and 170 controls. Further, whole-genome sequencing was performed in six patients (two with JAK2 V617F and four with wild-type JAK2), and putative somatic mutations were validated in a further 69 ET patients. Clinical and laboratory characteristics were also analyzed.

resultsSeveral germline SNPs and the 46 haplotype were significantly associated with PV and ET. Three somatic mutations in MPDZ, IQCH, and CALR genes were selected and validated. The frequency of the CALR mutation was 58.0% (40/69) in ET patients, who did not carry JAK2/MPL mutations. Moreover, compared with JAK2 V617F-positive patients, those with CALR mutations showed lower hemoglobin and hematocrit levels (P = 0.004 and P = 0.002, respectively), higher platelet counts (P =0.008), and a lower frequency of cytoreductive therapy (P = 0.014).

conclusionThis study was the first comprehensive investigation of the genetic characteristics of Korean patients with PV and ET. We found that somatic mutations and the 46 haplotype contribute to PV and ET pathogenesis in Korean patients.

Indexed as

AdultAgedAged, 80 and overCarrier ProteinsDNA Mutational AnalysisFemaleGene FrequencyGenetic Association StudiesGenetic Predisposition to DiseaseGenotypeHumansJanus Kinase 2MaleMembrane ProteinsMiddle AgedPolycythemia VeraCarrier ProteinsJAK2 protein, humanJanus Kinase 2Membrane ProteinsMPDZ protein, humanMPL protein, humanReceptors, Thrombopoietincalreticulinessential thrombocythemiahaplotypepolycythemia verawhole-genome sequencing

Identifiers

PMID27132877
PMCPMC6807207
OpenAlexW2345020348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.