Evidence map›Paper›PMID 27131875›Full record

ArticleDNA repair2016

Mismatch repair enhances convergent transcription-induced cell death at trinucleotide repeats by activating ATR.

Nimrat Chatterjee, Yunfu Lin, John H Wilson

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Chemical Insights into Oxidative and Nitrative Modifications of DNA.International journal of molecular sciences · 2023
    Review
  6. Review
  7. Mechanisms of DNA damage, repair, and mutagenesis.Environmental and molecular mutagenesis · 2017
    Review
  8. Fanconi anemia pathway regulates convergent transcription-induced cell death at trinucleotide repeats in human cells.Postdoc journal : a journal of postdoctoral research and postdoctoral affairs · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Nimrat ChatterjeeDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address: nimratchatterjee@gmail.com.
Yunfu LinDepartment of Epigenetics and Molecular Carcinogenesis, University of Texas MD Anderson Cancer Center, Smithville, TX 78957, USA.
John H WilsonVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Baylor College of Medicine · USMassachusetts Institute of Technology · USThe University of Texas MD Anderson Cancer Center · US

Funding

TARGETED RECOMBINATION IN MAMMALIAN CELLSR01GM038219 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI WILSON, JOHN H · 1987 to 2013
$4.3M
NIGMS NIH HHS R01 GM038219
6 · The paper itself

Abstract

Trinucleotide repeat (TNR) expansion beyond a certain threshold results in some 20 incurable neurodegenerative disorders where disease anticipation positively correlates with repeat length. Long TNRs typically display a bias toward further expansion during germinal transmission from parents to offspring, and then are highly unstable in somatic tissues of affected individuals. Understanding mechanisms of TNR instability will provide insights into disease pathogenesis. Previously, we showed that enhanced convergent transcription at long CAG repeat tracks induces TNR instability and cell death via ATR activation. Components of TC-NER (transcription-coupled nucleotide excision repair) and RNaseH enzymes that resolve RNA/DNA hybrids oppose cell death, whereas the MSH2 component of MMR (mismatch repair) enhances cell death. The exact role of the MMR pathway during convergent transcription-induced cell death at CAG repeats is not well understood. In this study, we show that siRNA knockdowns of MMR components-MSH2, MSH3, MLHI, PMS2, and PCNA-reduce DNA toxicity. Furthermore, knockdown of MSH2, MLH1, and PMS2 significantly reduces the frequency of ATR foci formation. These observations suggest that MMR proteins activate DNA toxicity by modulating ATR foci formation during convergent transcription.

Indexed as

DNA Mismatch RepairTrinucleotide RepeatsAtaxia Telangiectasia Mutated ProteinsBase SequenceCell DeathCell LineDNA-Binding ProteinsEnzyme ActivationGene Knockdown TechniquesHumansMutL Protein Homolog 1MutS Homolog 2 ProteinMutS Homolog 3 ProteinRNA, Small InterferingTranscription, GeneticAtaxia Telangiectasia Mutated ProteinsATR protein, humanDNA-Binding ProteinsMLH1 protein, humanMSH2 protein, humanMSH3 protein, humanMutL Protein Homolog 1MutS Homolog 2 ProteinMutS Homolog 3 ProteinRNA, Small InterferingATR DNA damage responseCell deathConvergent transcriptionMismatch repairNeurodegenerative diseasesTrinucleotide repeat instability

Identifiers

PMID27131875
PMCPMC4889435
OpenAlexW2336830367

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.