Evidence map›Paper›PMID 27129775›Full record

ArticleThe Journal of biological chemistry2016

Cofactors of LIM Domains Associate with Estrogen Receptor α to Regulate the Expression of Noncoding RNA H19 and Corneal Epithelial Progenitor Cell Function.

Rachel Herndon Klein, Denise N Stephens, Hsiang Ho, Jefferson K Chen, Michael L Salmans, Winnie Wang, Zhengquan Yu, Bogi Andersen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
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  4. False-positive IRESes fromProceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Rachel Herndon KleinFrom the Departments of Biological Chemistry and Institute for Genomics and Bioinformatics, University of California, Irvine, California 92697 and.
Denise N StephensFrom the Departments of Biological Chemistry and.
Hsiang HoMedicine and.
Jefferson K ChenMedicine and.
Michael L SalmansFrom the Departments of Biological Chemistry and Institute for Genomics and Bioinformatics, University of California, Irvine, California 92697 and.
Winnie WangFrom the Departments of Biological Chemistry and.
Zhengquan YuFrom the Departments of Biological Chemistry and State Key Laboratories for AgroBiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
Bogi AndersenFrom the Departments of Biological Chemistry and Institute for Genomics and Bioinformatics, University of California, Irvine, California 92697 and Medicine and bogi@uci.edu.
University of California, Irvine · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
Transcriptional Co-Regulators in EpidermisR01AR044882 · NIAMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI Bogi Andersen · 1998 to 2026
$9.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008620 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI GOLDIN, ALAN L · 1999 to 2023
$8.1M
Epithelial differentiation in corneaR01EY019413 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANDERSEN, BOGI · 2009 to 2012
$1.4M
Grhl3-mediated barrier repair in a psoriasis mouse modelF32AR065356 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HO, HSIANG · 2014 to 2015
$104k
T15LM00744NCI NIH HHS P30 CA062203NEI NIH HHS R01 EY019413NIAMS NIH HHS F32 AR065356NIAMS NIH HHS R01 AR044882NIGMS NIH HHS T32 GM008620
6 · The paper itself

Abstract

Cofactors of LIM domain proteins, CLIM1 and CLIM2, are widely expressed transcriptional cofactors that are recruited to gene regulatory regions by DNA-binding proteins, including LIM domain transcription factors. In the cornea, epithelium-specific expression of a dominant negative (DN) CLIM under the keratin 14 (K14) promoter causes blistering, wounding, inflammation, epithelial hyperplasia, and neovascularization followed by epithelial thinning and subsequent epidermal-like differentiation of the corneal epithelium. The defects in corneal epithelial differentiation and cell fate determination suggest that CLIM may regulate corneal progenitor cells and the transition to differentiation. Consistent with this notion, the K14-DN-Clim corneal epithelium first exhibits increased proliferation followed by fewer progenitor cells with decreased proliferative potential. In vivo ChIP-sequencing experiments with corneal epithelium show that CLIM binds to and regulates numerous genes involved in cell adhesion and proliferation, including limbally enriched genes. Intriguingly, CLIM associates primarily with non-LIM homeodomain motifs in corneal epithelial cells, including that of estrogen receptor α. Among CLIM targets is the noncoding RNA H19 whose deregulation is associated with Silver-Russell and Beckwith-Wiedemann syndromes. We demonstrate here that H19 negatively regulates corneal epithelial proliferation. In addition to cell cycle regulators, H19 affects the expression of multiple cell adhesion genes. CLIM interacts with estrogen receptor α at the H19 locus, potentially explaining the higher expression of H19 in female than male corneas. Together, our results demonstrate an important role for CLIM in regulating the proliferative potential of corneal epithelial progenitors and identify CLIM downstream target H19 as a regulator of corneal epithelial proliferation and adhesion.

Indexed as

AnimalsCell AdhesionCell Adhesion MoleculesCell ProliferationDNA-Binding ProteinsEpithelial CellsEpithelium, CornealEstrogen Receptor alphaFemaleGene Expression RegulationHumansLIM Domain ProteinsMaleMice, TransgenicRNA, Long NoncodingStem CellsCell Adhesion MoleculesDNA-Binding ProteinsESR1 protein, humanEstrogen Receptor alphaH19 long non-coding RNALdb1 protein, mouseLdb2 protein, mouseLIM Domain ProteinsRNA, Long NoncodingTranscription Factorscell proliferationcoregulatorscorneal epitheliumepithelial cellestrogen receptoreyegene regulationnoncoding RNAstem cells

Identifiers

PMID27129775
PMCPMC4933239
OpenAlexW2344649036

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.