Evidence map›Paper›PMID 27129386›Full record

ArticleBMC research notes2016

Inverse correlation between salt tolerance and host-adaptation in mycobacteria.

Shady Asmar, Mohamed Sassi, Michael Phelippeau, Michel Drancourt

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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  7. Direct matrix-assisted laser desorption ionisation time-of-flight mass spectrometry identification of mycobacteria from colonies.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Shady AsmarUnité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, CNRS, UMR 7278, IRD 198, Faculté de Médecine, Aix-Marseille Université, 27, Boulevard Jean Moulin, 13385, Marseille Cedex 5, France.
Mohamed SassiUniversité de Rennes 1, Rennes, France.
Michael PhelippeauUnité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, CNRS, UMR 7278, IRD 198, Faculté de Médecine, Aix-Marseille Université, 27, Boulevard Jean Moulin, 13385, Marseille Cedex 5, France.
Michel DrancourtUnité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, CNRS, UMR 7278, IRD 198, Faculté de Médecine, Aix-Marseille Université, 27, Boulevard Jean Moulin, 13385, Marseille Cedex 5, France. Michel.Drancourt@univ-amu.fr.
Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes · FRAix-Marseille Université · FRUniversité de Rennes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe genus Mycobacterium includes host-adapted organisms regarded as obligate and opportunistic pathogens and environmental organisms. Factors contributing to this wide range of adaptations are poorly known.

resultsWe studied the salt tolerance of 46 Mycobacterium species of medical interest. Representative strains of the Mycobacterium tuberculosis complex, Mycobacterium avium complex, Mycobacterium chelonae-abscessus complex, Mycobacterium ulcerans, Mycobacterium marinum, Mycobacterium lentiflavum, Mycobacterium fortuitum and Mycobacterium conceptionense were inoculated on Middlebrook 7H10 medium supplemented with 0-10% sodium chloride. Colonies were counted after 2-4 week incubation at the appropriate 30-37 °C temperature depending on the tested strain. Further comparative genomics was done on 15 Mycobacterium strains representing the spectrum of salt-tolerance of mycobacteria. Based on the results the different species were grouped according to their salt tolerance into a "salt-sensitive" group (growth up to ≤3% salt) containing the M. tuberculosis complex, Mycobacterium chelonae, Mycobacterium lentiflavum, Mycobacterium ulcerans and Mycobacterium marinum; a "salt-intermediate" group (growth between 4 and 6% salt) comprising Mycobacterium avium, Mycobacterium intracellulare, Mycobacterium chimaera and a "salt-resistant" group (growth up to >6%) comprising Mycobacterium homonissuis, Mycobacterium bolettii, Mycobacterium fortuitum and Mycobacterium conceptionense. Genomic analysis revealed that 290 genes were unique to species belonging to the salt-sensitive group; and that 15% were annotated as being functionally associated with the ESX secretion systems Pro-Glu and Pro-Pro-Glu family proteins.

conclusionsIn this work we found an inverse correlation between salt tolerance and host adaptation. We thus propose that salinity is one of the multiple factors determining the ecological niches of mycobacteria.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsBacteriological TechniquesCluster AnalysisEnvironmental MicrobiologyGenes, BacterialGenome, BacterialHost-Pathogen InteractionsHumansMycobacteriumMycobacterium InfectionsSalt ToleranceSequence Analysis, DNASpecies SpecificityBacterial ProteinsCultureMycobacteriumMycobacterium canettiiMycobacterium tuberculosisSalt

Identifiers

PMID27129386
PMCPMC4850692
OpenAlexW2343395607

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.