Evidence map›Paper›PMID 27129245›Full record

ArticleThe Journal of biological chemistry2016

Direct Binding to Replication Protein A (RPA)-coated Single-stranded DNA Allows Recruitment of the ATR Activator TopBP1 to Sites of DNA Damage.

Julyana Acevedo, Shan Yan, W Matthew Michael

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. RPA-independent activation of the ATR/CHK1 pathway.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A small-molecule inhibitor of TopBP1 exerts anti-MYC activity and synergy with PARP inhibitors.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Review
  13. Mind the replication gap.Royal Society open science · 2021
    Review
  14. MYB117 is a negative regulator of flowering time inPlant signaling & behavior · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Julyana AcevedoFrom the Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089 and.
Shan Yanthe Department of Biological Sciences, University of North Carolina, Charlotte, North Carolina 28223.
W Matthew MichaelFrom the Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089 and mattm@usc.edu.
University of Southern California · USUniversity of North Carolina at Charlotte · US

Funding

ATR-Chk1 signaling during embryonic and germ line development in C. elegansR01GM099825 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MICHAEL, MATTHEW · 2012 to 2015
$1.2M
Role of APE2 in DNA damage responseR15GM114713 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI YAN, SHAN · 2015 to 2015
$363k
Role of TopBP1 partner WDR18 in DNA damage checkpoint and DNA replicationR15GM101571 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI YAN, SHAN · 2012 to 2012
$297k
NIGMS NIH HHS R01 GM099825NIGMS NIH HHS R15 GM101571NIGMS NIH HHS R15 GM114713
6 · The paper itself

Abstract

A critical event for the ability of cells to tolerate DNA damage and replication stress is activation of the ATR kinase. ATR activation is dependent on the BRCT (BRCA1 C terminus) repeat-containing protein TopBP1. Previous work has shown that recruitment of TopBP1 to sites of DNA damage and stalled replication forks is necessary for downstream events in ATR activation; however, the mechanism for this recruitment was not known. Here, we use protein binding assays and functional studies in Xenopus egg extracts to show that TopBP1 makes a direct interaction, via its BRCT2 domain, with RPA-coated single-stranded DNA. We identify a point mutant that abrogates this interaction and show that this mutant fails to accumulate at sites of DNA damage and that the mutant cannot activate ATR. These data thus supply a mechanism for how the critical ATR activator, TopBP1, senses DNA damage and stalled replication forks to initiate assembly of checkpoint signaling complexes.

Indexed as

AnimalsCarrier ProteinsDNA-Binding ProteinsDNA DamageDNA, Single-StrandedProtein BindingProtein Structure, TertiaryReplication Protein AXenopus laevisCarrier ProteinsDNA-Binding ProteinsDNA, Single-StrandedReplication Protein ATopBP1 protein, XenopusATR kinaseBRCT domaincell cyclecheckpoint controlDNA damage responseDNA repairDNA replicationRPAssDNATopBP1

Identifiers

PMID27129245
PMCPMC4933228
OpenAlexW2953244225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.